Browse Element(s) Details


Os.4055.1.S1_at

Description gb:AK102421.1
DB_XREF= gi:32987630
TID=Os.4055.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4055 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-203-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093D18, full insert sequence.
FL= gb:AK102421.1 gb:AK061364.1 gb:AK109347.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3673011/11OST3/OST6 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36670Os.28943.1.S1_x_at2/113+20292734..20295965retrotransposon protein, putative, unclassified
LOC_Os03g36684OsAffx.9930.1.S1_at3/113+20296903..20302866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36684OsAffx.8397.1.S1_at1/113+20296903..20302866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36684OsAffx.534.1.S1_at1/113+20296903..20302866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36684Os.1924.1.S1_at1/113+20296903..20302866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36684Os.47130.4.A1_x_at1/113+20296903..20302866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36684Os.27455.2.S1_at1/113+20296903..20302866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36700OsAffx.17054.1.S1_at1/113+20303587..20307091retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36710OsAffx.3414.1.S1_at10/113+20308741..20312541hypothetical protein
LOC_Os03g36720NANA3+20315374..20317455retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36730Os.4055.1.S1_at11/113+20318154..20324666OST3/OST6 family protein, putative, expressed
LOC_Os03g36730OsAffx.661.1.S1_x_at1/113+20318154..20324666OST3/OST6 family protein, putative, expressed
LOC_Os03g36740NANA3+20329970..20331315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36750Os.6292.1.S1_at10/113+20334252..20341704HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g36760Os.53338.1.S1_at10/113+20346177..20351156expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015157molecular_functionoligosaccharide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4055.1.S1_at--159--8631Chr03:20323802..20323826 (25 bp)
TGCGGTTGGGTTCTTGTACACTCTC
LOC_Os03g36730
Os.4055.1.S1_at--1085--691Chr03:20323768..20323792 (25 bp)
ATGATCGCCATGGTGACACACTTGC
LOC_Os03g36730
Os.4055.1.S1_at--272--6012Chr12:6100783..6100812 (24 bp)
GAGAGCCTGCAGATCCAGCGTTTTA
NONE
Os.4055.1.S1_at--820--1631Chr03:20323716..20323740 (25 bp)
AGCGTTTTACGATGCTGGCGGTCAT
LOC_Os03g36730
Os.4055.1.S1_at--707--5731Chr03:20323640..20323664 (25 bp)
GACTGGATATAGCATTCATACCTTC
LOC_Os03g36730
Os.4055.1.S1_at--558--5751Chr03:20323577..20323601 (25 bp)
GACGATATGGATGGTTTCTTCCTTC
LOC_Os03g36730
Os.4055.1.S1_at--1022--10531Chr03:20323565..20323586 (22 bp)
TTCTTCCTTCGGTTTCTGAGGTTAT
LOC_Os03g36730
Os.4055.1.S1_at--710--151Chr03:20318474..20318498 (25 bp)
ATTATCCAACTTTGACCGTGCTGAG
LOC_Os03g36730
Os.4055.1.S1_at--975--7611Chr03:20318427..20318451 (25 bp)
GGGACTTGCCAAGTTTATTTTTGCA
LOC_Os03g36730
Os.4055.1.S1_at--133--5691Chr03:20318337..20318361 (25 bp)
GACATTGCACATCTATCACTTGAAC
LOC_Os03g36730
Os.4055.1.S1_at--884--6951Chr03:20318252..20318276 (25 bp)
GTAGCTTGTCAGGTGCATTGTCATT
LOC_Os03g36730
Target Sequence 
TGCGGTTGGGTTCTTGTACACTCTCGTGGGGCTCATGATCGCCATGGTGACACACTTGCTGGTGAGGGTGGAGAGCCTGC
AGATCCAGCGTTTTACGATGCTGGCGGTCATGATAATTGGGTGGTGGGCAGTGAAGAAGGTGATTCTTTTGGATAACTGG
AAGACTGGATATAGCATTCATACCTTCTGGCCCAGCAGCTGGAGGTAAATGCTTGTACAATGGCAGACGATATGGATGGT
TTCTTCCTTCGGTTTCTGAGGTTATGGAATTATCCAACTTTGACCGTGCTGAGATAGAGCATATTTTGGAGTGTTGGGAC
TTGCCAAGTTTATTTTTGCAAATTTCTGATGCTGTAGTATGAAATATGTAGACCTCAAGTCATGTTAGTTATGCAGAGGA
ATTATGACATTGCACATCTATCACTTGAACAAGAAAGTTTGGCTTTTGAATTATTGGTTTGGTTTCTTCGAATGATGTAT
CGTGGTTGATGTAGCTTGTCAGGTGCATTGTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis