Browse Element(s) Details


OsAffx.8397.1.S1_at

Description gb:NM_195277.1
DB_XREF= gi:37531913
TID=OsAffx.8397.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol polyprotein (OSJNBb0038H12.4), mRNA.
PROD=putative gag-pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1128011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g366841/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g640801/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11240OsAffx.20647.1.S1_at11/1110+5998784..6001847hypothetical protein
LOC_Os10g11250OsAffx.8398.1.S1_at11/1110+6002618..6007189transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11260Os.14656.2.S1_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11260Os.14656.2.S1_x_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11260Os.14656.1.S1_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11270Os.46538.1.S1_at11/1110+6017219..6019621Sulfotransferase domain containing protein, expressed
LOC_Os10g11270Os.38273.1.S1_at1/1110+6017219..6019621Sulfotransferase domain containing protein, expressed
LOC_Os10g11280OsAffx.8397.1.S1_at11/1110+6023789..6028093retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g11290NANA10+6030061..6031547retrotransposon protein, putative, unclassified
LOC_Os10g11310Os.46498.1.S1_at11/1110+6037808..6041839expressed protein
LOC_Os10g11310Os.46498.2.S1_x_at7/1110+6037808..6041839expressed protein
LOC_Os10g11320OsAffx.18218.1.S1_at11/1110+6048125..6048670expressed protein
LOC_Os10g11330Os.20602.2.S1_x_at11/1110+6049861..6052041hAT family dimerisation domain containing protein
LOC_Os10g11340OsAffx.18219.1.S1_at10/1110+6052816..6055864nitroreductase family protein, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8397.1.S1_at--575--7391Chr10:6024288..6024312 (25 bp)
GTGATGGCATTCTGTTAACTCAAGA
LOC_Os10g11280
OsAffx.8397.1.S1_at--123--7991Chr10:6024223..6024247 (25 bp)
GGATGCAAGCCTGTTGCTACACCTA
LOC_Os10g11280
OsAffx.8397.1.S1_at--269--4851Chr10:6024208..6024232 (25 bp)
GCTACACCTATGTCTACCACAGAAA
LOC_Os10g11280
OsAffx.8397.1.S1_at--839--3171Chr10:6024183..6024207 (25 bp)
AATTGTCAGCTCACAGTGGTTCTGT
LOC_Os10g11280
OsAffx.8397.1.S1_at--628--51Chr10:6024124..6024148 (25 bp)
ATTGTTGGAGCTTTGCGGCCAGATA
LOC_Os10g11280
OsAffx.8397.1.S1_at--612--4711Chr10:6024110..6024134 (25 bp)
GCGGCCAGATATTTCCTTTGTAGTA
LOC_Os10g11280
OsAffx.8397.1.S1_at--226--1231Chr10:6024072..6024096 (25 bp)
AGTTCTTGCATGGTCCTACTTTACA
LOC_Os10g11280
OsAffx.8397.1.S1_at--481--3731Chr10:6024057..6024081 (25 bp)
CTACTTTACAGCATTGGATGGCAGT
LOC_Os10g11280
OsAffx.8397.1.S1_at--715--10491Chr10:6023982..6024006 (25 bp)
TTAACAGATCTTCTTCCACTCTTGT
LOC_Os10g11280
OsAffx.8397.1.S1_at--1073--9213Chr10:6023968..6023992 (25 bp)
TCCACTCTTGTTAGTGCTTTTTCTG
LOC_Os10g11280
OsAffx.8397.1.S1_at--21--8311Chr10:6023899..6023923 (25 bp)
GGCTTTGCAGTTTTCCTTGGTTCAA
LOC_Os10g11280
Target Sequence 
GTGATGGCATTCTGTTAACTCAAGAAAAGTATGCGTCTGACTTGTTAAAAAGGGCTGGTATGTCAGGATGCAAGCCTGTT
GCTACACCTATGTCTACCACAGAAAAATTGTCAGCTCACAGTGGTTCTGTATTAGGAGAACAAGATGCTACTAAATATAG
AAGTATTGTTGGAGCTTTGCGGCCAGATATTTCCTTTGTAGTAAATAAAGTTTGTCAGTTCTTGCATGGTCCTACTTTAC
AGCATTGGATGGCAGTTAAGAGGATACTGAGATATATTAAGTCTTCTATTGATCTTGGTTTAAGGATTAACAGATCTTCT
TCCACTCTTGTTAGTGCTTTTTCTGATGCAGATTGGGCCGGATCAGTAGATGATAGAAGATCCACAGGAGGCTTTGCAGT
TTTCCTTGGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis