Browse Element(s) Details


Os.38273.1.S1_at

Description gb:AK107263.1
DB_XREF= gi:32992472
TID=Os.38273.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-H03, full insert sequence.
FL= gb:AK107263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2442011/11expressed protein
LOC_Os06g244041/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g112701/11Sulfotransferase domain containing protein, expressed
LOC_Os12g042201/11Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24370NANA4+13948063..13955445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24380NANA4+13956780..13957436retrotransposon, putative, centromere-specific
LOC_Os04g24390NANA4+13959475..13962175retrotransposon protein, putative, unclassified
LOC_Os04g24400NANA4+13962813..13963322retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24410Os.35543.1.S1_at11/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.26050.3.A1_at11/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.32229.1.S1_x_at9/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.28576.1.S1_s_at4/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.32306.1.S1_x_at1/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24414Os.38273.2.S1_at11/114+13979041..13981278expressed protein
LOC_Os04g24414Os.15576.1.S1_at11/114+13979041..13981278expressed protein
LOC_Os04g24414Os.38273.2.S1_x_at11/114+13979041..13981278expressed protein
LOC_Os04g24420Os.38273.1.S1_at11/114+13980253..13981553expressed protein
LOC_Os04g24430Os.48521.1.S1_at8/114+13983603..13988518Sucrose synthase 2, putative, expressed
LOC_Os04g24430Os.46781.1.S1_at2/114+13983603..13988518Sucrose synthase 2, putative, expressed
LOC_Os04g24440NANA4+13990348..13993368retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g24450OsAffx.31892.5.S1_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24450OsAffx.24431.1.S1_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24450OsAffx.31892.5.S1_x_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24460OsAffx.26128.1.S1_at11/114+14003269..14004470phytase, putative
LOC_Os04g24460OsAffx.28544.2.S1_x_at1/114+14003269..14004470phytase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0005773cellular_componentvacuole
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0009706cellular_componentchloroplast inner membrane
GO:0005262molecular_functioncalcium channel activity
GO:0005388molecular_functioncalcium-transporting ATPase activity
GO:0005516molecular_functioncalmodulin binding
GO:0008146molecular_functionsulfotransferase activity
GO:0008415molecular_functionacyltransferase activity
GO:0015085molecular_functioncalcium ion transporter activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38273.1.S1_at--1006--4134Chr12:13510670..13510767 (25 bp)
CGCTGCCGATCCGTAAAAAGTGGAG
NONE
Os.38273.1.S1_at--667--232Chr04:13981308..13981332 (25 bp)
ATATAGGCCTGTTTGGATACTCCGG
LOC_Os04g24420
Os.38273.1.S1_at--784--6472Chr04:13981323..13981347 (25 bp)
GATACTCCGGCTATTAACTAATCCA
LOC_Os04g24420
Os.38273.1.S1_at--181--3032Chr04:13981342..13981366 (25 bp)
AATCCATAATTAGCGGCTCCGGGCT
LOC_Os04g24420
Os.38273.1.S1_at--334--8312Chr04:13981356..13981380 (25 bp)
GGCTCCGGGCTATTAACTAATCCAT
LOC_Os04g24420
Os.38273.1.S1_at--138--3152Chr04:13981381..13981405 (25 bp)
AATTAACGGCTGATTACTATAGAAT
LOC_Os04g24420
Os.38273.1.S1_at--1139--10014Chr11:13412041..13412181 (25 bp)
TAGAATCACTGTAGCAAATCATGGA
NONE
Os.38273.1.S1_at--825--31196Chr12:14232811..14232834 (24 bp)
AATATACCTCGTTAGATTCGTCTCA
NONE
Os.38273.1.S1_at--14--6592Chr04:13981441..13981465 (25 bp)
GATTCGTCTCATAAAATAGCCTAGA
LOC_Os04g24420
Os.38273.1.S1_at--479--3654Chr07:17519396..17519415 (20 bp)
CTTAAATAGCAAGATTCCGGAGCGC
NONE
Os.38273.1.S1_at--758--4572Chr04:13981528..13981552 (25 bp)
GCGCTATTTAATAGCCCTCCGAAAC
LOC_Os04g24420
Target Sequence 
CGCTGCCGATCCGTAAAAAGTGGAGATGGAGGGGAAAGTGGGTGAACGGTTTCTACGAGGGAGAGGGAGGGAGTAAATAT
AGGCCTGTTTGGATACTCCGGCTATTAACTAATCCATAATTAGCGGCTCCGGGCTATTAACTAATCCATAATTAACGGCT
GATTACTATAGAATCACTGTAGCAAATCATGGATTAATATACCTCGTTAGATTCGTCTCATAAAATAGCCTAGAAGTTAT
GGAATAGGTTTTATCAGTAATCTATGTTTAAATACTCTTAAATAGCAAGATTCCGGAGCGCTATTTAATAGCCCTCCGAA
AC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis