Browse Element(s) Details


OsAffx.28576.1.S1_s_at

Description gb:NM_195939.1
DB_XREF= gi:37533237
TID=OsAffx.28576.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative Myb-like transcription factor (OSJNBb0023M11.8), mRNA.
PROD=putative Myb-like transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2361011/11hypothetical protein
LOC_Os08g2167011/11hypothetical protein
LOC_Os04g177004/11kinesin heavy chain isolog, putative, expressed
LOC_Os04g244104/11kinesin heavy chain isolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23610OsAffx.28576.1.S1_s_at11/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.21694.3.S1_x_at11/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.21694.3.S1_at9/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32284.1.S1_x_at4/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32305.1.S1_x_at2/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32283.1.S1_at1/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32283.1.A1_at1/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32282.1.S1_at1/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.19957.1.S1_at1/1112+13401406..13405646hypothetical protein
LOC_Os12g23620OsAffx.19786.1.S1_at11/1112+13406735..13407264hypothetical protein
LOC_Os12g23630NANA12+13410274..13410561ATP synthase alpha chain, mitochondrial, putative
LOC_Os12g23640NANA12+13417496..13420422retrotransposon protein, putative, unclassified
LOC_Os12g23650NANA12+13421735..13422592retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23660OsAffx.1646.1.S1_x_at1/1112+13423367..13426858retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23670Os.50549.1.S1_at4/1112+13428473..13430948expressed protein
LOC_Os12g23670OsAffx.27496.2.S1_x_at1/1112+13428473..13430948expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0006979biological_processresponse to oxidative stress
GO:0009611biological_processresponse to wounding
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0015992biological_processproton transport
GO:0042776biological_processATP synthesis coupled proton transport (sensu Eukaryota)
GO:0045333biological_processcellular respiration
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0045255cellular_componenthydrogen-translocating F-type ATPase complex
GO:0045548molecular_functionphenylalanine ammonia-lyase activity
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28576.1.S1_s_at--699--8519Chr12:13403527..13403551 (25 bp)
TGGAAGGTCGGAGAAGCCAGTCTTC
NONE
OsAffx.28576.1.S1_s_at--917--8199Chr12:13403528..13403552 (25 bp)
GGAAGGTCGGAGAAGCCAGTCTTCA
NONE
OsAffx.28576.1.S1_s_at--663--2899Chr12:13403530..13403554 (25 bp)
AAGGTCGGAGAAGCCAGTCTTCAGT
NONE
OsAffx.28576.1.S1_s_at--525--7199Chr12:13403533..13403557 (25 bp)
GTCGGAGAAGCCAGTCTTCAGTGGT
NONE
OsAffx.28576.1.S1_s_at--786--3957Chr12:13403535..13403559 (25 bp)
CGGAGAAGCCAGTCTTCAGTGGTGC
NONE
OsAffx.28576.1.S1_s_at--459--5978Chr12:13403537..13403561 (25 bp)
GAGAAGCCAGTCTTCAGTGGTGCTT
NONE
OsAffx.28576.1.S1_s_at--282--1458Chr12:13403538..13403562 (25 bp)
AGAAGCCAGTCTTCAGTGGTGCTTC
NONE
OsAffx.28576.1.S1_s_at--615--2658Chr12:13403540..13403564 (25 bp)
AAGCCAGTCTTCAGTGGTGCTTCCA
NONE
OsAffx.28576.1.S1_s_at--1034--1678Chr12:13403541..13403565 (25 bp)
AGCCAGTCTTCAGTGGTGCTTCCAT
NONE
OsAffx.28576.1.S1_s_at--942--4418Chr12:13403542..13403566 (25 bp)
GCCAGTCTTCAGTGGTGCTTCCATG
NONE
OsAffx.28576.1.S1_s_at--488--4358Chr12:13403543..13403567 (25 bp)
CCAGTCTTCAGTGGTGCTTCCATGG
NONE
Target Sequence 
TGGAAGGTCGGAGAAGCCAGTCTTCAGTGGTGCTTCCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28576.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis