Browse Element(s) Details


OsAffx.19957.1.S1_at

Description tigr:9640.m03290
TID=OsAffx.19957.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g341208/11hypothetical protein
LOC_Os12g340608/11hypothetical protein
LOC_Os12g236101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34110OsAffx.32292.1.S1_x_at11/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.1.S1_at10/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.2.S1_at9/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.1.S2_at9/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110Os.13521.1.S1_at2/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34120OsAffx.19957.1.S1_at8/1112+20637962..20639692hypothetical protein
LOC_Os12g34130OsAffx.32254.1.S1_x_at11/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.32253.1.S1_x_at11/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.19953.6.S1_s_at11/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.19953.1.S1_x_at10/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.19953.2.S1_at10/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34140NANA12+20650665..20654319retrotransposon protein, putative, unclassified
LOC_Os12g34149OsAffx.32277.1.S1_x_at5/1112+20663671..20664024hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
GO:0042776biological_processATP synthesis coupled proton transport (sensu Eukaryota)
GO:0045333biological_processcellular respiration
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0045255cellular_componenthydrogen-translocating F-type ATPase complex
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19957.1.S1_at--500--14911Chr12:20627598..20627622 (25 bp)
AGCAACGGATTGAGCGCACTAGCGC
NONE
OsAffx.19957.1.S1_at--842--55514Chr12:20627623..20627647 (25 bp)
GAAAGCGTTAGCACGCGCATCCGTT
NONE
OsAffx.19957.1.S1_at--1007--533Chr01:30469643..30469667 (25 bp)
ATCCGTTTTCTTGCTGGCCGAGTTA
NONE
OsAffx.19957.1.S1_at--141--8972Chr12:20639667..20639691 (25 bp)
TGACACACGGATATGCTTTCGCTGC
LOC_Os12g34120
OsAffx.19957.1.S1_at--1125--7872Chr12:20639642..20639666 (25 bp)
GGTTGACCGAACACTTCGCGACATT
LOC_Os12g34120
OsAffx.19957.1.S1_at--798--5972Chr12:20639615..20639639 (25 bp)
GAGAACTTCTGCAAATGACACTGGT
LOC_Os12g34120
OsAffx.19957.1.S1_at--602--7893Chr01:34702477..34702497 (21 bp)
GGTTCAAATCCGCATCACAGACTAG
NONE
OsAffx.19957.1.S1_at--1139--6152Chr12:20639070..20639094 (25 bp)
GAGGAAATTCCAACCGTATCACTTA
LOC_Os12g34120
OsAffx.19957.1.S1_at--221--9932Chr12:20638096..20638120 (25 bp)
TACGAGATTCCGCAAGCATTACTTG
LOC_Os12g34120
OsAffx.19957.1.S1_at--962--7292Chr12:20638062..20638086 (25 bp)
GTGCGCCACTAAGACTGATTGCTTT
LOC_Os12g34120
OsAffx.19957.1.S1_at--300--2832Chr12:20638024..20638048 (25 bp)
AAGTTCGTACCAGTGCATGCTGTCG
LOC_Os12g34120
Target Sequence 
AGCAACGGATTGAGCGCACTAGCGCGAAAGCGTTAGCACGCGCATCCGTTTTCTTGCTGGCCGAGTTAATAAAAAAGAAA
TCTCTCATAATTAGGGATGAAGCACCAATGACACACGGATATGCTTTCGCTGCGGTTGACCGAACACTTCGCGACATTAG
GAGAACTTCTGCAAATGACACTGGTTCAAATCCGCATCACAGACTAGAAATAGCTGAAACGCTTGAGAATCCTGAAGATT
GGTTTAATGCTGAGGAAATTCCAACCGTATCACTTAGTGGTTCTGTATATTATTACGAGATTCCGCAAGCATTACTTGAA
AGAGGAAGTGCGCCACTAAGACTGATTGCTTTTCTAGCACAGATGAAGTTCGTACCAGTGCATGCTGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis