Browse Element(s) Details


OsAffx.19953.2.S1_at

Description gb:AK063463.1
DB_XREF= gi:32973481
TID=OsAffx.19953.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-H04, full insert sequence.
FL= gb:AK063463.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3407011/11Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g3413010/11Mitochondrial ribosomal protein S3, putative
LOC_Os01g339605/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34050NANA12+20532542..20533825retrotransposon protein, putative, unclassified
LOC_Os12g34060OsAffx.19957.1.S1_at8/1112+20540298..20542028hypothetical protein
LOC_Os12g34070OsAffx.19953.1.S1_x_at11/1112+20546309..20550353Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g34070OsAffx.19953.2.S1_at11/1112+20546309..20550353Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g34070OsAffx.32275.1.S1_at11/1112+20546309..20550353Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g34070OsAffx.19953.6.S1_s_at11/1112+20546309..20550353Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g34070OsAffx.19953.7.S1_s_at11/1112+20546309..20550353Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g34070OsAffx.32273.1.S1_at11/1112+20546309..20550353Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g34070OsAffx.32254.1.S1_x_at11/1112+20546309..20550353Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g34070OsAffx.32253.1.S1_x_at11/1112+20546309..20550353Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g34079OsAffx.32277.1.S1_x_at5/1112+20555414..20555767hypothetical protein
LOC_Os12g34090NANA12+20560445..20567178retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0006412biological_processprotein biosynthesis
GO:0045333biological_processcellular respiration
GO:0005740cellular_componentmitochondrial envelope
GO:0005763cellular_componentmitochondrial small ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19953.2.S1_at--402--6732Chr12:20646273..20646297 (25 bp)
GTTCAGTGGTCGTAACGTAATTGGT
LOC_Os12g34130
OsAffx.19953.2.S1_at--908--5192Chr12:20646329..20646353 (25 bp)
GAATTTGGCGAAGTGTTTGTTCCTG
LOC_Os12g34130
OsAffx.19953.2.S1_at--359--8392Chr12:20646335..20646359 (25 bp)
GGCGAAGTGTTTGTTCCTGAACGAG
LOC_Os12g34130
OsAffx.19953.2.S1_at--516--7412Chr12:20646341..20646365 (25 bp)
GTGTTTGTTCCTGAACGAGGGAAGT
LOC_Os12g34130
OsAffx.19953.2.S1_at--444--2793Chr12:20548854..20548878 (25 bp)
AAGAGGGATAGGGAGCTCGCCTCCT
LOC_Os12g34070
OsAffx.19953.2.S1_at--573--10354Chr12:20646405..20646429 (25 bp)
TTTTGAATCGCCGAAATTGTACGAC
LOC_Os12g34130
OsAffx.19953.2.S1_at--439--5594Chr12:20646417..20646441 (25 bp)
GAAATTGTACGACGACCCTTCTTGT
LOC_Os12g34130
OsAffx.19953.2.S1_at--623--5813Chr12:20646430..20646454 (25 bp)
GACCCTTCTTGTTCCAGGCATACGA
LOC_Os12g34130
OsAffx.19953.2.S1_at--858--3593Chr12:20646437..20646461 (25 bp)
CTTGTTCCAGGCATACGACTCTGAG
LOC_Os12g34130
OsAffx.19953.2.S1_at--995--9274Chr12:20646480..20646504 (25 bp)
TCCGGCCCGGTAAAGTGACAGTTAT
LOC_Os12g34130
OsAffx.19953.2.S1_at--863--4554Chr12:20646483..20646507 (25 bp)
GGCCCGGTAAAGTGACAGTTATATA
LOC_Os12g34130
Target Sequence 
GTTCAGTGGTCGTAACGTAATTGGTTAGTGGGGAAAAACCGGGCCGGGACTCAAAAGAATTTGGCGAAGTGTTTGTTCCT
GAACGAGGGAAGTGGAAAGACAAAGAGGGATAGGGAGCTCGCCTCCTTCTTTTTTTGAATCGCCGAAATTGTACGACGAC
CCTTCTTGTTCCAGGCATACGACTCTGAGACGTGACGGTGTCACTTTTCCGGCCCGGTAAAGTGACAGTTATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19953.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis