Browse Element(s) Details


OsAffx.32283.1.S1_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=orf187
TID=OsAffx.32283.1
CNT=1
FEA=DNA_28
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Nuclear-like sequence (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=Nuclear-like sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g236101/11hypothetical protein
LOC_Os02g295501/11AP2 domain containing protein, expressed
LOC_Os04g553001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23610OsAffx.28576.1.S1_s_at11/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.21694.3.S1_x_at11/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.21694.3.S1_at9/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32284.1.S1_x_at4/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32305.1.S1_x_at2/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32283.1.S1_at1/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32283.1.A1_at1/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32282.1.S1_at1/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.19957.1.S1_at1/1112+13401406..13405646hypothetical protein
LOC_Os12g23620OsAffx.19786.1.S1_at11/1112+13406735..13407264hypothetical protein
LOC_Os12g23630NANA12+13410274..13410561ATP synthase alpha chain, mitochondrial, putative
LOC_Os12g23640NANA12+13417496..13420422retrotransposon protein, putative, unclassified
LOC_Os12g23650NANA12+13421735..13422592retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23660OsAffx.1646.1.S1_x_at1/1112+13423367..13426858retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23670Os.50549.1.S1_at4/1112+13428473..13430948expressed protein
LOC_Os12g23670OsAffx.27496.2.S1_x_at1/1112+13428473..13430948expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0015992biological_processproton transport
GO:0042776biological_processATP synthesis coupled proton transport (sensu Eukaryota)
GO:0045333biological_processcellular respiration
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0045255cellular_componenthydrogen-translocating F-type ATPase complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32283.1.S1_at--113--215Chr12:20603765..20603789 (25 bp)
ATTTGTATCACACCCGAGCAATGGA
NONE
OsAffx.32283.1.S1_at--110--6373Chr12:20603835..20603859 (25 bp)
GATCCAGGATCGACTGCTATCTGAA
NONE
OsAffx.32283.1.S1_at--1086--8553Chr12:20603869..20603893 (25 bp)
TGGATCTGATTACCCATTGGCGTCT
NONE
OsAffx.32283.1.S1_at--170--2014Chr12:20603918..20603942 (25 bp)
ACTCTGTGTCTTTTGCGTTTCCTTA
NONE
OsAffx.32283.1.S1_at--894--4635Chr12:20603932..20603956 (25 bp)
GCGTTTCCTTATTCATGTACTCATG
NONE
OsAffx.32283.1.S1_at--210--74Chr12:20603983..20604007 (25 bp)
ATTGCAATCGATCTATCCCTTGGTC
NONE
OsAffx.32283.1.S1_at--952--10714Chr12:20604002..20604026 (25 bp)
TTGGTCCTCCCAATCGAATTGTTAA
NONE
OsAffx.32283.1.S1_at--610--156Chr12:20604073..20604097 (25 bp)
ATTAGCGGCTGTACCAAATGATCAA
NONE
OsAffx.32283.1.S1_at--709--6835Chr12:20604134..20604158 (25 bp)
GTTTCACCGATGTGTTGGGCACTGA
NONE
OsAffx.32283.1.S1_at--1066--8479Chr12:20604224..20604248 (25 bp)
TGGAATCGAACCACTCTGTTAGGAT
NONE
OsAffx.32283.1.S1_at--601--10099Chr12:20604243..20604267 (25 bp)
TAGGATTTAGAGTCCAACGCGCAAA
NONE
Target Sequence 
ATTTGTATCACACCCGAGCAATGGACCGGGGAAGGAGTTTCATTCATTTACGGAGTTTGGAAGCGAGGACGATCCAGGAT
CGACTGCTATCTGAAGAAGTGGAATGGATCTGATTACCCATTGGCGTCTGCATTGACGCTTCTGACTACCCCTACTCTGT
GTCTTTTGCGTTTCCTTATTCATGTACTCATGTCTATTTCTATTTGTATGATACTGATATTGCAATCGATCTATCCCTTG
GTCCTCCCAATCGAATTGTTAAGTATGTTTTTTCCCTTTCGAGAAATGGTGGCAGTACCAAATGCCGAATTAGCGGCTGT
ACCAAATGATCAATGCCTCTGGGGTTTCCCTTCTCTTCAGCTCTCCCCGGTTTCACCGATGTGTTGGGCACTGAACACTT
TTCAAGATCCGGTTTTGGTAGGACGAAGATTTTTCACTTTCGTGAAGGTCGTTCTGAGGTGGAATCGAACCACTCTGTTA
GGATTTAGAGTCCAACGCGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis