Browse Element(s) Details


OsAffx.32283.1.A1_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=orf187
TID=OsAffx.32283.1
CNT=1
FEA=DNA_28
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Nuclear-like sequence (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=Nuclear-like sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g425309/11retrotransposon protein, putative, unclassified
LOC_Os12g236101/11hypothetical protein
LOC_Os01g339601/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42480Os.56126.1.S1_at10/113+23587568..23594348expressed protein
LOC_Os03g42480Os.5139.2.S1_x_at1/113+23587568..23594348expressed protein
LOC_Os03g42480OsAffx.1396.1.S1_x_at1/113+23587568..23594348expressed protein
LOC_Os03g42480Os.5139.2.S1_at1/113+23587568..23594348expressed protein
LOC_Os03g42490NANA3+23596182..23596505hypothetical protein
LOC_Os03g42500NANA3+23598592..23599562hypothetical protein
LOC_Os03g42510OsAffx.32023.1.S1_at9/113+23602186..23605688transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42520Os.51789.1.S1_at11/113+23610229..23611456expressed protein
LOC_Os03g42530OsAffx.32283.1.A1_at9/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.11392.2.S1_x_at6/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.9772.1.S1_at3/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.11392.3.S1_at1/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.27793.1.S1_at1/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.25352.1.S1_at1/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42540Os.45976.1.S1_x_at6/113+23625903..23629075transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42540Os.45976.1.S1_at3/113+23625903..23629075transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42550OsAffx.25494.1.S1_at10/113+23643788..23646025hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
GO:0042776biological_processATP synthesis coupled proton transport (sensu Eukaryota)
GO:0045333biological_processcellular respiration
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0045255cellular_componenthydrogen-translocating F-type ATPase complex
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32283.1.A1_at--280--10299Chr12:20621098..20621122 (25 bp)
TTTGCGCGTTGGACTCTAAATCCTA
NONE
OsAffx.32283.1.A1_at--101--10535Chr12:13405109..13405133 (25 bp)
TTCAGTGCCCAACACATCGGTGAAA
NONE
OsAffx.32283.1.A1_at--860--2375Chr12:13405157..13405181 (25 bp)
AAACCCCAGAGGCATTGATCATTTG
NONE
OsAffx.32283.1.A1_at--617--6436Chr09:4674542..4674566 (25 bp)
GATCATTTGGTACAGCCGCTAATTC
NONE
OsAffx.32283.1.A1_at--723--3157Chr09:4674562..4674586 (25 bp)
AATTCGGCATTTGGTACTGCCACCA
NONE
OsAffx.32283.1.A1_at--198--7016Chr09:4674575..4674599 (25 bp)
GTACTGCCACCATTTCTCGAAAGGG
NONE
OsAffx.32283.1.A1_at--709--7694Chr09:4674754..4674778 (25 bp)
GGGTAATCAGATCCATTCCACTTCT
NONE
OsAffx.32283.1.A1_at--573--2053Chr09:4674773..4674797 (25 bp)
ACTTCTTCAGATAGCAGTCGATCCT
NONE
OsAffx.32283.1.A1_at--812--3793Chr12:13349707..13349731 (25 bp)
CTCGCTTCCAAACTCCGTAAATGAA
NONE
OsAffx.32283.1.A1_at--498--9815Chr12:13349724..13349748 (25 bp)
TAAATGAATGAAACTCCTTCCCCGG
NONE
OsAffx.32283.1.A1_at--41--9255Chr12:13349749..13349773 (25 bp)
TCCATTGCTCGGGTGTGATACAAAT
NONE
Target Sequence 
TTTGCGCGTTGGACTCTAAATCCTAACAGAGTGGTTCGATTCCACCTCAGAACGACCTTCACGAAAGTGAAAAATCTTCG
TCCTACCAAAACCGGATCTTGAAAAGTGTTCAGTGCCCAACACATCGGTGAAACCGGGGAGAGCTGAAGAGAAGGGAAAC
CCCAGAGGCATTGATCATTTGGTACAGCCGCTAATTCGGCATTTGGTACTGCCACCATTTCTCGAAAGGGAAAAAACATA
CTTAACAATTCGATTGGGAGGACCAAGGGATAGATCGATTGCAATATCAGTATCATACAAATAGAAATAGACATGAGTAC
ATGAATAAGGAAACGCAAAAGACACAGAGTAGGGGTAGTCAGAAGCGTCAATGCAGACGCCAATGGGTAATCAGATCCAT
TCCACTTCTTCAGATAGCAGTCGATCCTGGATCGTCCTCGCTTCCAAACTCCGTAAATGAATGAAACTCCTTCCCCGGTC
CATTGCTCGGGTGTGATACAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32283.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis