Browse Element(s) Details


OsAffx.25352.1.S1_at

Description tigr:9631.m03234
TID=OsAffx.25352.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3301211/11hypothetical protein
LOC_Os08g050601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g164101/11hypothetical protein
LOC_Os03g425301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32990NANA3+18814897..18815487hypothetical protein
LOC_Os03g33000OsAffx.4916.1.S1_at1/113+18818993..18821256hypothetical protein
LOC_Os03g33010NANA3+18827985..18828593transposon protein, putative, unclassified
LOC_Os03g33012OsAffx.25352.1.S1_at11/113+18837351..18840888hypothetical protein
LOC_Os03g33012OsAffx.11392.2.S1_x_at2/113+18837351..18840888hypothetical protein
LOC_Os03g33014NANA3+18841533..18842147retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33020Os.2353.1.S1_at11/113+18844158..18848116WRKY DNA binding domain containing protein, expressed
LOC_Os03g33020Os.2353.2.S1_at8/113+18844158..18848116WRKY DNA binding domain containing protein, expressed
LOC_Os03g33030NANA3+18848240..18850265Transposable element protein, putative, Transposase_28
LOC_Os03g33040Os.47722.1.S1_at1/113+18850823..18851700hypothetical protein
LOC_Os03g33042NANA3+18855137..18856378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33044NANA3+18856940..18857569retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33050Os.24831.3.S1_x_at8/113+18865062..18867952retrotransposon protein, putative, unclassified
LOC_Os03g33050Os.24831.1.S1_x_at8/113+18865062..18867952retrotransposon protein, putative, unclassified
LOC_Os03g33050Os.24831.4.S1_x_at1/113+18865062..18867952retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25352.1.S1_at--73--7991Chr03:18838775..18838799 (25 bp)
GGATGCGGAGCAGTTTGCTACTCAT
LOC_Os03g33012
OsAffx.25352.1.S1_at--428--9911Chr03:18838793..18838817 (25 bp)
TACTCATGACTGTTAGCTGCGTTTT
LOC_Os03g33012
OsAffx.25352.1.S1_at--1080--1211Chr03:18840401..18840425 (25 bp)
AGTTCAGCTTTTCTGCCAGGCAGGC
LOC_Os03g33012
OsAffx.25352.1.S1_at--702--7611Chr03:18840458..18840482 (25 bp)
GGGACAGACCGTTGGTACCAACCAT
LOC_Os03g33012
OsAffx.25352.1.S1_at--725--9471Chr03:18840535..18840559 (25 bp)
TCTGAAGTGCCCATACGGTACAATA
LOC_Os03g33012
OsAffx.25352.1.S1_at--336--6531Chr03:18840577..18840601 (25 bp)
GATTTCCATCTGTTTGATATCTCTG
LOC_Os03g33012
OsAffx.25352.1.S1_at--491--10751Chr03:18840605..18840629 (25 bp)
TTGACATACTCATAGGACATCCCAT
LOC_Os03g33012
OsAffx.25352.1.S1_at--1008--9751Chr03:18840641..18840665 (25 bp)
TAAATGTGCCCGAAACCGGTGTCCT
LOC_Os03g33012
OsAffx.25352.1.S1_at--974--5538Chr06:14015423..14015534 (25 bp)
GAAACCGGTGTCCTCAACCTGAAAG
NONE
OsAffx.25352.1.S1_at--1064--4231Chr03:18840695..18840719 (25 bp)
CCGTCCCTGTATTGCAATCAACCAA
LOC_Os03g33012
OsAffx.25352.1.S1_at--514--891Chr03:18840785..18840809 (25 bp)
AGGCCCCAGAGTCTAATCTCGATGA
LOC_Os03g33012
Target Sequence 
GGATGCGGAGCAGTTTGCTACTCATGACTGTTAGCTGCGTTTTGGGTTATGTGTGGAAGTTCAGCTTTTCTGCCAGGCAG
GCAGATAAGTTCAAGAAAAGGTATCCTTGGTTAGGGGACAGACCGTTGGTACCAACCATCAAAACCTTCCAAATCTCCAC
AAATCCTACTACCGAAGGTTTAGGGATTATCTCTGAAGTGCCCATACGGTACAATAGCGTTGAGGTCATCTTAGATTTCC
ATCTGTTTGATATCTCTGATTTTGACATACTCATAGGACATCCCATAGAGAAACTCTTAAATGTGCCCGAAACCGGTGTC
CTCAACCTGAAAGTAGGAAAAATCGTCACCTCCGTCCCTGTATTGCAATCAACCAATTCTTTGACGGAGCNTCTTCCTGT
TCCTGAGCCAATTGAGGAAGTGATGGCTATTTCTCCATTCGAGGCCCCAGAGTCTAATCTCGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis