Browse Element(s) Details


Os.47722.1.S1_at

Description gb:AK058503.1
DB_XREF= gi:32968521
TID=Os.47722.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.47722 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-016-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-F08, full insert sequence.
FL= gb:AK058503.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g330401/11hypothetical protein
LOC_Os06g253601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g061501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g33010NANA3+18827985..18828593transposon protein, putative, unclassified
LOC_Os03g33012OsAffx.25352.1.S1_at11/113+18837351..18840888hypothetical protein
LOC_Os03g33012OsAffx.11392.2.S1_x_at2/113+18837351..18840888hypothetical protein
LOC_Os03g33014NANA3+18841533..18842147retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33020Os.2353.1.S1_at11/113+18844158..18848116WRKY DNA binding domain containing protein, expressed
LOC_Os03g33020Os.2353.2.S1_at8/113+18844158..18848116WRKY DNA binding domain containing protein, expressed
LOC_Os03g33030NANA3+18848240..18850265Transposable element protein, putative, Transposase_28
LOC_Os03g33040Os.47722.1.S1_at1/113+18850823..18851700hypothetical protein
LOC_Os03g33042NANA3+18855137..18856378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33044NANA3+18856940..18857569retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33050Os.24831.3.S1_x_at8/113+18865062..18867952retrotransposon protein, putative, unclassified
LOC_Os03g33050Os.24831.1.S1_x_at8/113+18865062..18867952retrotransposon protein, putative, unclassified
LOC_Os03g33050Os.24831.4.S1_x_at1/113+18865062..18867952retrotransposon protein, putative, unclassified
LOC_Os03g33060Os.46314.2.S1_x_at7/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060Os.46334.1.S1_x_at3/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060Os.10731.2.A1_at1/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060Os.46334.1.S1_at1/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060OsAffx.8785.1.S1_at1/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060Os.47114.1.S1_x_at1/113+18871657..18876391transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47722.1.S1_at--53--5451NONE
GAACATCCAGGTTTTAGTTTTTGAT
NONE
Os.47722.1.S1_at--1063--3051Chr03:18535778..18535802 (25 bp)
AATCTGATGAACTGTGTTGGCGGAT
NONE
Os.47722.1.S1_at--188--26139Chr12:26687631..26688039 (25 bp)
AACCCGTGGCGAAGGCTATGAACCA
NONE
Os.47722.1.S1_at--649--4597Chr06:8852508..8852531 (24 bp)
GCGAAGGCTATGAACCAAGGATGAT
NONE
Os.47722.1.S1_at--68--2898Chr06:8852541..8852655 (25 bp)
AAGGGTCGCGTGAGTACCTGCCGAA
NONE
Os.47722.1.S1_at--826--7799Chr06:8852544..8852658 (25 bp)
GGTCGCGTGAGTACCTGCCGAAGAA
NONE
Os.47722.1.S1_at--70--4678Chr03:18576830..18576854 (25 bp)
GCGTGAGTACCTGCCGAAGAAGGAC
NONE
Os.47722.1.S1_at--13--3572Chr03:18577043..18577067 (25 bp)
CATCAAGGGCCCATAAGTCCTCTTG
NONE
Os.47722.1.S1_at--472--8412Chr03:18577050..18577074 (25 bp)
GGCCCATAAGTCCTCTTGACATTAT
NONE
Os.47722.1.S1_at--1132--1132Chr03:18577058..18577082 (25 bp)
AGTCCTCTTGACATTATGTAACCCT
NONE
Os.47722.1.S1_at--808--9697Chr10:12023720..12023742 (23 bp)
TCAAAATTTAATACACTTCGTTTCT
NONE
Target Sequence 
GAACATCCAGGTTTTAGTTTTTGATTGGCATATAAAAATCTGATGAACTGTGTTGGCGGATGGCATGAGGCCCTTCGACC
AAATTTGCCGAAACCCGTGGCGAAGGCTATGAACCAAGGATGATGCGAGGCGAAGGGTCGCGTGAGTACCTGCCGAAGAA
GGACGACTTCGCCATAGCCAGTTNGCCCTGGCATCCAGCGAAGAAGGACGGCTTCGCCATGTCCAGTTCGCCCTGGCATC
CAGCTNGAAGAAGGACGGCTTNACCATGTCCAGTTCGCCCCCGCAANGGCCNAAGAAGCCTTTTCGGCCCATCAAGCTTA
GGGGCTATAGGGCCGNCGGTCGCCTGACGGCCCATCAAGGGCCCATAAGTCCTCTTGACATTATGTAACCCTNTAAACGT
CCCTNTCATAAGGGCAACCATGTAAATTCCCCCGTATAACCTAAATCCTAGTAGTAAGAACCTGTAATGGGGCTATAAAT
AGTCCCCTAGGGCCATGTAATGGGGGATCCCAAGAAAAATTCAAAATTTAATACACTTCGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis