Browse Element(s) Details


Os.46334.1.S1_at

Description gb:NM_195895.1
DB_XREF= gi:37533149
TID=Os.46334.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0045C13.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0045C13.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2048010/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g157102/11transposon protein, putative, unclassified
LOC_Os09g174902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g293201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g260301/11hypothetical protein
LOC_Os10g141201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g304401/11hypothetical protein
LOC_Os07g134301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g161601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g330601/11transposon protein, putative, unclassified
LOC_Os11g262901/11hypothetical protein
LOC_Os11g193301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g097161/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20450Os.7350.1.S1_at11/1110+9961832..9964513MATE efflux family protein, expressed
LOC_Os10g20460OsAffx.30461.1.S1_at10/1110+9965696..9967221hypothetical protein
LOC_Os10g20470Os.5049.1.S1_at11/1110+9970261..9973000MATE efflux family protein, expressed
LOC_Os10g20470OsAffx.30725.5.S1_x_at1/1110+9970261..9973000MATE efflux family protein, expressed
LOC_Os10g20480Os.51856.1.S2_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S2_x_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S1_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_x_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.27435.1.S1_x_at3/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20490OsAffx.22421.1.S1_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.4.S1_x_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.16244.1.S1_x_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.2.S1_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20500OsAffx.20487.1.S1_s_at11/1110+9998558..10000348hypothetical protein
LOC_Os10g20500OsAffx.20487.2.S1_at10/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.52284.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.29966.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20510Os.25521.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510OsAffx.18309.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_x_at10/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_at9/1110+10005999..10011288expressed protein
LOC_Os10g20520OsAffx.30462.1.S1_at11/1110+10012486..10012787hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46334.1.S1_at--677--8511Chr10:9987346..9987370 (25 bp)
TGGCAAGGCGCCATTAGCTGCTCAA
LOC_Os10g20480
Os.46334.1.S1_at--834--5171Chr10:9987344..9987368 (25 bp)
GCAAGGCGCCATTAGCTGCTCAAAA
LOC_Os10g20480
Os.46334.1.S1_at--73--2951Chr10:9987342..9987366 (25 bp)
AAGGCGCCATTAGCTGCTCAAAAGC
LOC_Os10g20480
Os.46334.1.S1_at--634--8991Chr10:9987328..9987352 (25 bp)
TGCTCAAAAGCCTCCGACCGAATTC
LOC_Os10g20480
Os.46334.1.S1_at--951--2371Chr10:9986898..9986922 (25 bp)
AAACGATCGAGCCAACATTGTGGAC
LOC_Os10g20480
Os.46334.1.S1_at--528--6391Chr10:9986894..9986918 (25 bp)
GATCGAGCCAACATTGTGGACTATA
LOC_Os10g20480
Os.46334.1.S1_at--78--5851Chr10:9986890..9986914 (25 bp)
GAGCCAACATTGTGGACTATATCAA
LOC_Os10g20480
Os.46334.1.S1_at--1082--3251Chr10:9986886..9986910 (25 bp)
CAACATTGTGGACTATATCAAGGAC
LOC_Os10g20480
Os.46334.1.S1_at--892--10434Chr11:14552570..14552590 (21 bp)
TTATGTGTGCCTACAATCAACAGAA
LOC_Os11g26290
Os.46334.1.S1_at--522--7911Chr11:11054076..11054096 (21 bp)
ATGTGTGCCTACAATCAACAGAAAA
LOC_Os11g19330
Os.46334.1.S1_at--141--7292Chr07:9129529..9129995 (25 bp)
GTGCCTACAATCAACAGAAAAAATT
LOC_Os07g15710
Target Sequence 
TGGCAAGGCGCCATTAGCTGCTCAAAAGCCTCCGACCGAATTCACATTGGGCATGCCATTGGTCGGTGACGATGCCTTAT
TCAAGATGGACCCTGCATGCAAGGAGTTGCACGGGGTGCGAGCGATCGATACCAACCTCCTTGAGTGCTACTCCTTGTTA
ACCTGGAAGCATGTCCATCATAAAGCACCCCATGTTGCCTTACTCGATCCAGCTGTCGTCAATGAGACAACGCTGAAAAA
CGATCGAGCCAACATTGTGGACTATATCAAGGACTGCTTATTTGCCCGTCAAAGACAAGGACTTCATTATGTGTGCCTAC
AATCAACAGAAAAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis