Browse Element(s) Details


OsAffx.30725.5.S1_x_at

Description tigr:9637.m03136
TID=OsAffx.30725.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to protein phosphatase 2, regulatory subunit B (B56), gamma isoform, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3706011/11transposon protein, putative, unclassified, expressed
LOC_Os07g233544/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g394143/11transposon protein, putative, unclassified
LOC_Os10g204701/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37012Os.27784.1.S1_at11/119+21346754..21350396Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g37020Os.11211.1.S1_at11/119+21354735..21357365expressed protein
LOC_Os09g37040OsAffx.30162.1.S1_at11/119+21365910..21369912expressed protein
LOC_Os09g37050Os.51002.1.S1_at10/119+21370433..21371895RING-H2 finger protein ATL2B, putative, expressed
LOC_Os09g37060OsAffx.30725.5.S1_x_at11/119+21375332..21377938transposon protein, putative, unclassified, expressed
LOC_Os09g37070OsAffx.18022.1.S1_at11/119+21381175..21382806pentatricopeptide, putative
LOC_Os09g37080Os.53581.1.S1_at11/119+21385537..21386617expressed protein
LOC_Os09g37090OsAffx.30163.1.S1_at11/119+21389834..21390046hypothetical protein
LOC_Os09g37100Os.11408.1.S2_at11/119+21391293..21397466Phospholipase D delta, putative, expressed
LOC_Os09g37100Os.11408.1.S1_at10/119+21391293..21397466Phospholipase D delta, putative, expressed
LOC_Os09g37110OsAffx.30164.1.S1_at11/119+21398391..21401460hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30725.5.S1_x_at--687--1032Chr10:9970921..9970940 (20 bp)
AGGTCTGCGGCAGCATCATCAACGG
LOC_Os10g20470
OsAffx.30725.5.S1_x_at--8--5812Chr10:20691272..20691296 (25 bp)
GACGCGGTGGGTGCACACGTACCAC
LOC_Os10g39414
OsAffx.30725.5.S1_x_at--103--4011Chr09:21377006..21377030 (25 bp)
CGTGCTCCAGTTCGTCCACAAGGAC
LOC_Os09g37060
OsAffx.30725.5.S1_x_at--155--8432Chr07:13165001..13165025 (25 bp)
GGCCGGCGACCAACTGCCAGAAGGA
LOC_Os07g23354
OsAffx.30725.5.S1_x_at--885--4413Chr12:23882194..23882218 (25 bp)
GCCAGAAGGAGGTGCTGCTCATCGA
NONE
OsAffx.30725.5.S1_x_at--184--1293Chr12:23882230..23882254 (25 bp)
AGATCGTCGAGATCCTCGACCAGCA
NONE
OsAffx.30725.5.S1_x_at--59--1513Chr12:23882251..23882275 (25 bp)
AGCACCACTTCGACAAGCTCGTCGT
NONE
OsAffx.30725.5.S1_x_at--498--7114Chr12:23882304..23882326 (23 bp)
GTCAGCAGCTGCAGCTCACAGGTGG
NONE
OsAffx.30725.5.S1_x_at--972--4571Chr09:21375622..21375646 (25 bp)
GCGCTGTACGTGTGGAACAACGAGC
LOC_Os09g37060
OsAffx.30725.5.S1_x_at--211--1911Chr09:21375615..21375639 (25 bp)
ACGTGTGGAACAACGAGCGGTTCGT
LOC_Os09g37060
OsAffx.30725.5.S1_x_at--911--551Chr09:21375547..21375571 (25 bp)
ATCCTGCCGGCGTTCGTGGCGAGCA
LOC_Os09g37060
Target Sequence 
AGGTCTGCGGCAGCATCATCAACGGCTTCGCCGTGCCGCTCAAGGAGGAGCACCGGGCGTTCATGGCGCGCGTGCTGCTG
CCGCTGCACCGGACGCGGTGGGTGCACACGTACCACCGCCAGCTCGCCTACTGCGTGCTCCAGTTCGTCCACAAGGACCC
CGGCCTCGCCGGCGCCGCCGTCAGGGACATCCTCCGCCACTGGCCGGCGACCAACTGCCAGAAGGAGGTGCTGCTCATCG
ACGAGCTCGAGGAGATCGTCGAGATCCTCGACCAGCACCACTTCGACAAGCTCGTCGTCCCCGTCTGCTCCCGGATCGCC
CGCTGCGTCAGCAGCTGCAGCTCACAGGTGGCGGAGAGGGCGCTGTACGTGTGGAACAACGAGCGGTTCGTGGCGATGGC
GTGCGCGGCGGGGCCGGCGGCGATGGAGGAGCGGATCCTGCCGGCGTTCGTGGCGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30725.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis