Browse Element(s) Details


Os.53581.1.S1_at

Description gb:AK073400.1
DB_XREF= gi:32983423
TID=Os.53581.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53581 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044N08, full insert sequence.
FL= gb:AK073400.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3708011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37040OsAffx.30162.1.S1_at11/119+21365910..21369912expressed protein
LOC_Os09g37050Os.51002.1.S1_at10/119+21370433..21371895RING-H2 finger protein ATL2B, putative, expressed
LOC_Os09g37060OsAffx.30725.5.S1_x_at11/119+21375332..21377938transposon protein, putative, unclassified, expressed
LOC_Os09g37070OsAffx.18022.1.S1_at11/119+21381175..21382806pentatricopeptide, putative
LOC_Os09g37080Os.53581.1.S1_at11/119+21385537..21386617expressed protein
LOC_Os09g37090OsAffx.30163.1.S1_at11/119+21389834..21390046hypothetical protein
LOC_Os09g37100Os.11408.1.S2_at11/119+21391293..21397466Phospholipase D delta, putative, expressed
LOC_Os09g37100Os.11408.1.S1_at10/119+21391293..21397466Phospholipase D delta, putative, expressed
LOC_Os09g37110OsAffx.30164.1.S1_at11/119+21398391..21401460hypothetical protein
LOC_Os09g37120OsAffx.6501.1.S1_x_at11/119+21408790..21410016Ornithine decarboxylase, putative, expressed
LOC_Os09g37120OsAffx.13673.1.S1_x_at1/119+21408790..21410016Ornithine decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53581.1.S1_at--164--4811Chr09:21386127..21386151 (25 bp)
GCTCGGGCAGATGAAGCGGTTCACC
LOC_Os09g37080
Os.53581.1.S1_at--465--1291Chr09:21386135..21386159 (25 bp)
AGATGAAGCGGTTCACCAGCGGCCG
LOC_Os09g37080
Os.53581.1.S1_at--734--1991Chr09:21386329..21386353 (25 bp)
ACTCCGCTTCGACTTCCATAGATGA
LOC_Os09g37080
Os.53581.1.S1_at--190--2071Chr09:21386340..21386364 (25 bp)
ACTTCCATAGATGACGTCAGCGTGC
LOC_Os09g37080
Os.53581.1.S1_at--121--5771Chr09:21386352..21386376 (25 bp)
GACGTCAGCGTGCATGAGCTTTTGC
LOC_Os09g37080
Os.53581.1.S1_at--719--5911Chr09:21386367..21386391 (25 bp)
GAGCTTTTGCATGCGTGTTCATCGA
LOC_Os09g37080
Os.53581.1.S1_at--875--10271Chr09:21386372..21386396 (25 bp)
TTTGCATGCGTGTTCATCGATCTGT
LOC_Os09g37080
Os.53581.1.S1_at--1107--8791Chr09:21386394..21386418 (25 bp)
TGTTCGTCCATTTCTAGGCCCAAAT
LOC_Os09g37080
Os.53581.1.S1_at--583--10571Chr09:21386405..21386429 (25 bp)
TTCTAGGCCCAAATGCGAGCGTATT
LOC_Os09g37080
Os.53581.1.S1_at--366--4071Chr09:21386420..21386444 (25 bp)
CGAGCGTATTCCCATTCCAATGTAA
LOC_Os09g37080
Os.53581.1.S1_at--310--7031Chr09:21386478..21386502 (25 bp)
GTACAGTCATATACTTCACACGAAA
LOC_Os09g37080
Target Sequence 
GCTCGGGCAGATGAAGCGGTTCACCAGCGGCCGCGCGGCGTTCGAGGACTTCGACTGGAGGGAGGCGGAGAGGATGGCGA
GTGACGACGACGACGACGTGCTCGTCGCGCACTCGGCGCCGCTCGTGCTCGGCGGCGGCCTGGTGGCGTCGGAGCCGAGG
AAGGAGGTGAACCTCTGGAGCCGGCGACCCATGGCTCCTCCCACTCCGCTTCGACTTCCATAGATGACGTCAGCGTGCAT
GAGCTTTTGCATGCGTGTTCATCGATCTGTTCGTCCATTTCTAGGCCCAAATGCGAGCGTATTCCCATTCCAATGTAATT
TTTTGATTTTTTTTTGTTCTTGGAGTAATTTGTACAGTCATATACTTCACACGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis