Browse Element(s) Details


Os.51002.1.S1_at

Description gb:AK060109.1
DB_XREF= gi:32970127
TID=Os.51002.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-308-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-C10, full insert sequence.
FL= gb:AK060109.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3705010/11RING-H2 finger protein ATL2B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37006Os.9612.1.S1_at11/119+21343056..21346171expressed protein
LOC_Os09g37012Os.27784.1.S1_at11/119+21346754..21350396Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g37020Os.11211.1.S1_at11/119+21354735..21357365expressed protein
LOC_Os09g37040OsAffx.30162.1.S1_at11/119+21365910..21369912expressed protein
LOC_Os09g37050Os.51002.1.S1_at10/119+21370433..21371895RING-H2 finger protein ATL2B, putative, expressed
LOC_Os09g37060OsAffx.30725.5.S1_x_at11/119+21375332..21377938transposon protein, putative, unclassified, expressed
LOC_Os09g37070OsAffx.18022.1.S1_at11/119+21381175..21382806pentatricopeptide, putative
LOC_Os09g37080Os.53581.1.S1_at11/119+21385537..21386617expressed protein
LOC_Os09g37090OsAffx.30163.1.S1_at11/119+21389834..21390046hypothetical protein
LOC_Os09g37100Os.11408.1.S2_at11/119+21391293..21397466Phospholipase D delta, putative, expressed
LOC_Os09g37100Os.11408.1.S1_at10/119+21391293..21397466Phospholipase D delta, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51002.1.S1_at--1024--3951Chr09:21371585..21371609 (25 bp)
CGGAGCTTTCATCGCCATGGAGGTC
LOC_Os09g37050
Os.51002.1.S1_at--1090--1991Chr09:21371556..21371580 (25 bp)
ACTCGCTCGCCAAGATTTGGTGCTA
LOC_Os09g37050
Os.51002.1.S1_at--78--10851Chr09:21371540..21371564 (25 bp)
TTGGTGCTACGAGGAGTACTCCATC
LOC_Os09g37050
Os.51002.1.S1_at--18--4771Chr09:21371413..21371437 (25 bp)
GCTGCTTGTGTTCTGGAATCTTGTG
LOC_Os09g37050
Os.51002.1.S1_at--546--5251Chr09:21371398..21371422 (25 bp)
GAATCTTGTGATTGATCGCCTCACC
LOC_Os09g37050
Os.51002.1.S1_at--770--10471Chr09:21371350..21371373 (24 bp)
TTAACCACGGTGTTGGATAGCCAGT
LOC_Os09g37050
Os.51002.1.S1_at--287--6491Chr09:21370845..21371358 (25 bp)
GATAGCCAGTTGAACGCGGTGCCGT
LOC_Os09g37050
Os.51002.1.S1_at--500--4011Chr09:21370741..21370765 (25 bp)
CGTCGACCAGCTTCCGGTGATCAAG
LOC_Os09g37050
Os.51002.1.S1_at--726--6051Chr09:21370508..21370532 (25 bp)
GAGATTGCCGGCGTGTTGCCACATC
LOC_Os09g37050
Os.51002.1.S1_at--720--2551Chr09:21370462..21370486 (25 bp)
AACTGGTTGCTGTGGCATGCCCTAT
LOC_Os09g37050
Os.51002.1.S1_at--1104--8471Chr09:21370431..21370455 (25 bp)
TGTGCCGTCGTCCTGTCAACTAAAT
NONE
Target Sequence 
CGGAGCTTTCATCGCCATGGAGGTCGTCGACTCGCTCGCCAAGATTTGGTGCTACGAGGAGTACTCCATCGCCACTCGAG
CTCACCTCATGCTGCTTGTGTTCTGGAATCTTGTGATTGATCGCCTCACCGTGCGCACCTCGGTTTTCCCTACCTTAACC
ACGGTGTTGGATAGCCAGTTGAACGCGGTGCCGTCGCGCCATAGACGAGCAGAGGTGAGCGGCGACCTGACCGGCCGGAG
TTACCCGGTGGTGATGGGCATGCGGCTCGCCGCCGTCGACCAGCTTCCGGTGATCAAGCTCACGGCGGCGCAGACGGACG
CCACCGGCGCCTGCCCCATTTGCCTTCACGATTTCAAGGCCGGCGAGATTGCCAGGAGATTGCCGGCGTGTTGCCACATC
TTCCATTTGGGGTGCATCGACAACTGGTTGCTGTGGCATGCCCTATGCCCAATGTGCCGTCGTCCTGTCAACTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis