Browse Element(s) Details


Os.27784.1.S1_at

Description gb:AK105001.2
DB_XREF= gi:42821616
TID=Os.27784.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-004-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-D11, full insert sequence.
FL= gb:AK105001.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3701211/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36970OsAffx.6499.1.S1_at11/119+21327366..21327821hypothetical protein
LOC_Os09g36970OsAffx.6499.1.S1_x_at11/119+21327366..21327821hypothetical protein
LOC_Os09g36976Os.24767.1.S1_at11/119+21330266..21332247expressed protein
LOC_Os09g36976OsAffx.30161.1.S1_s_at11/119+21330266..21332247expressed protein
LOC_Os09g36982Os.51421.1.S1_at10/119+21332768..21334610expressed protein
LOC_Os09g36990Os.10051.1.S1_at11/119+21336091..21338012expressed protein
LOC_Os09g37000Os.15703.1.S1_at11/119+21338282..2134172726S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os09g37006Os.9612.1.S1_at11/119+21343056..21346171expressed protein
LOC_Os09g37012Os.27784.1.S1_at11/119+21346754..21350396Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g37020Os.11211.1.S1_at11/119+21354735..21357365expressed protein
LOC_Os09g37040OsAffx.30162.1.S1_at11/119+21365910..21369912expressed protein
LOC_Os09g37050Os.51002.1.S1_at10/119+21370433..21371895RING-H2 finger protein ATL2B, putative, expressed
LOC_Os09g37060OsAffx.30725.5.S1_x_at11/119+21375332..21377938transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27784.1.S1_at--132--3271Chr09:21347322..21347393 (25 bp)
CAACTGCTACAACTTCGACGAATCG
LOC_Os09g37012
Os.27784.1.S1_at--711--5251Chr09:21347303..21347327 (25 bp)
GAATCGAGCAGACTTCCGGTGAACC
LOC_Os09g37012
Os.27784.1.S1_at--473--10511Chr09:21347271..21347295 (25 bp)
TTCAGCTGTTCCTTCGAAACCCGGT
LOC_Os09g37012
Os.27784.1.S1_at--537--7811Chr09:21347249..21347273 (25 bp)
GGTCTTGGTCCGAGTAGCTACACCC
LOC_Os09g37012
Os.27784.1.S1_at--67--2391Chr09:21347199..21347223 (25 bp)
AAACGGCACCCAGGTCAATGTGATG
LOC_Os09g37012
Os.27784.1.S1_at--175--3211Chr09:21347184..21347208 (25 bp)
CAATGTGATGCCTTCAGCAAGCTCA
LOC_Os09g37012
Os.27784.1.S1_at--178--91Chr09:21347118..21347142 (25 bp)
ATTCCTCATCGTTCTCTGAATTCTG
LOC_Os09g37012
Os.27784.1.S1_at--182--4911Chr09:21347062..21347086 (25 bp)
GCTTCAGAGCTCCATTATCCTGTAT
LOC_Os09g37012
Os.27784.1.S1_at--997--10551Chr09:21347003..21347027 (25 bp)
TTCTTCCTTGTTTTTGTAGTTGCTG
LOC_Os09g37012
Os.27784.1.S1_at--812--5251Chr09:21346928..21346952 (25 bp)
GAATCGTCATAGAGAGGCCATTTTT
LOC_Os09g37012
Os.27784.1.S1_at--1069--631Chr09:21346859..21346883 (25 bp)
ATGCATTCCACTGAGGGTTTGTTTC
LOC_Os09g37012
Target Sequence 
CAACTGCTACAACTTCGACGAATCGAGCAGACTTCCGGTGAACCCCAGCCCTTCAGCTGTTCCTTCGAAACCCGGTCTTG
GTCCGAGTAGCTACACCCCTGAAGCAGCCAAAGGAGCTTTGCCAAACGGCACCCAGGTCAATGTGATGCCTTCAGCAAGC
TCACCGCTGCAACCGCAGAGCGTTTCCGCCACCATTGTTCTCCTATTCCTCATCGTTCTCTGAATTCTGAATTCTGATCA
GCTCAGCTCCAGCCACCATAGCTTCAGAGCTCCATTATCCTGTATTGATGATTTGATTACACATAGGATCACATTCTTTT
TCTTCCTTGTTTTTGTAGTTGCTGTAGGGCTATAGGAGTTGTAGAGTTGTAGAGAGGATAGATCACACTCACAAGAATCG
TCATAGAGAGGCCATTTTTCAGTTGATTTTTTTTACGTGTTCATATGTATAAACCTCATAATAATGCATTCCACTGAGGG
TTTGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis