Browse Element(s) Details


Os.9612.1.S1_at

Description gb:AK102114.1
DB_XREF= gi:32987323
TID=Os.9612.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033084H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084H19, full insert sequence.
FL= gb:AK102114.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3700611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36960NANA9+21320178..21320582hypothetical protein
LOC_Os09g36970OsAffx.6499.1.S1_at11/119+21327366..21327821hypothetical protein
LOC_Os09g36970OsAffx.6499.1.S1_x_at11/119+21327366..21327821hypothetical protein
LOC_Os09g36976Os.24767.1.S1_at11/119+21330266..21332247expressed protein
LOC_Os09g36976OsAffx.30161.1.S1_s_at11/119+21330266..21332247expressed protein
LOC_Os09g36982Os.51421.1.S1_at10/119+21332768..21334610expressed protein
LOC_Os09g36990Os.10051.1.S1_at11/119+21336091..21338012expressed protein
LOC_Os09g37000Os.15703.1.S1_at11/119+21338282..2134172726S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os09g37006Os.9612.1.S1_at11/119+21343056..21346171expressed protein
LOC_Os09g37012Os.27784.1.S1_at11/119+21346754..21350396Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g37020Os.11211.1.S1_at11/119+21354735..21357365expressed protein
LOC_Os09g37040OsAffx.30162.1.S1_at11/119+21365910..21369912expressed protein
LOC_Os09g37050Os.51002.1.S1_at10/119+21370433..21371895RING-H2 finger protein ATL2B, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9612.1.S1_at--655--4951Chr09:21343705..21343729 (25 bp)
GCATATGCGGGCAACGGGTACACCC
LOC_Os09g37006
Os.9612.1.S1_at--428--8871Chr09:21343592..21343616 (25 bp)
TGATGAGGCACCAGTTCACGCGCCG
LOC_Os09g37006
Os.9612.1.S1_at--431--9731Chr09:21343404..21343428 (25 bp)
TCAATGGCGTTATGCATGCTACTGC
LOC_Os09g37006
Os.9612.1.S1_at--176--631Chr09:21343389..21343413 (25 bp)
ATGCTACTGCAGTTGGCGCCTAAGC
LOC_Os09g37006
Os.9612.1.S1_at--628--2351Chr09:21343348..21343372 (25 bp)
AAAGCTGTTGTTTGTTGGATGCCTG
LOC_Os09g37006
Os.9612.1.S1_at--624--8631Chr09:21343288..21343312 (25 bp)
TGGGTTAACACCATACTCTGTATAA
LOC_Os09g37006
Os.9612.1.S1_at--903--91Chr09:21343256..21343280 (25 bp)
ATTCTGTTAGAATGCTGCCGGATTT
LOC_Os09g37006
Os.9612.1.S1_at--1012--4771Chr09:21343243..21343267 (25 bp)
GCTGCCGGATTTTGATTTTTAACTA
LOC_Os09g37006
Os.9612.1.S1_at--765--731Chr09:21343196..21343220 (25 bp)
ATGTTTGTTTTTCTTCCAGTAGTAG
LOC_Os09g37006
Os.9612.1.S1_at--522--10451Chr09:21343136..21343160 (25 bp)
TTAGAGCAGTGCATTCTTTCAATTT
LOC_Os09g37006
Os.9612.1.S1_at--483--6691Chr09:21343092..21343116 (25 bp)
GTTGCCATCTTATAATGTGCCAGCT
LOC_Os09g37006
Target Sequence 
GCATATGCGGGCAACGGGTACACCCGTGGAAGAGGNNGTGNNTTTAGGGNCCNTGGCAGGAGAGNTGGCGGCNTATGGNG
CNCAACCTGATTATCAGCAAGATGGAGGATACTATGATGAGGCACCAGTTCACGCGCCGCCCCGAGNCCGTGGTCGTGGT
CGAGNCCGTGGGAGAGGCCCGGTCCGAGGTAGAGGACGCGGTGGCAACGTCAATGGCGTTATGCATGCTACTGCAGTTGG
CGCCTAAGCTGGCTGCTGCTATTCCAAAGCTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAAGATGTATCATCTGTGTT
GTTTATGGGTTAACACCATACTCTGTATAAGCTTGACATTCTGTTAGAATGCTGCCGGATTTTGATTTTTAACTAGGTTT
GTAGGATAGTCTCTATAATGTTTGTTTTTCTTCCAGTAGTAGTTGCAAACTAATTGTAGTGTTCAGTTGGTAAAGGTTTA
GAGCAGTGCATTCTTTCAATTTTTATATAAACCNAAATCCTGTTGCCATCTTATAATGTGCCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis