Browse Element(s) Details


Os.5049.1.S1_at

Description gb:AK069792.1
DB_XREF= gi:32979816
TID=Os.5049.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.5049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transmembrane protein (OSJNBa0045C13.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031K22, full insert sequence.
FL= gb:AK069792.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2047011/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20430Os.46306.1.S1_x_at6/1110+9941426..9946497transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20440OsAffx.20488.1.S1_at11/1110+9955022..9960740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20450Os.7350.1.S1_at11/1110+9961832..9964513MATE efflux family protein, expressed
LOC_Os10g20460OsAffx.30461.1.S1_at10/1110+9965696..9967221hypothetical protein
LOC_Os10g20470Os.5049.1.S1_at11/1110+9970261..9973000MATE efflux family protein, expressed
LOC_Os10g20470OsAffx.30725.5.S1_x_at1/1110+9970261..9973000MATE efflux family protein, expressed
LOC_Os10g20480Os.51856.1.S2_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S2_x_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S1_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_x_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.27435.1.S1_x_at3/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20490OsAffx.22421.1.S1_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.4.S1_x_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.16244.1.S1_x_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.2.S1_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5049.1.S1_at--365--3891Chr10:9970931..9970955 (25 bp)
CTGTGGCTTGGCATCGTCTGCGGCA
LOC_Os10g20470
Os.5049.1.S1_at--559--4971Chr10:9970906..9970930 (25 bp)
GCATCATCAAACTACTGGTGCTTAT
LOC_Os10g20470
Os.5049.1.S1_at--161--3911Chr10:9970892..9970916 (25 bp)
CTGGTGCTTATAATTGTCTCGTGTT
LOC_Os10g20470
Os.5049.1.S1_at--718--9511Chr10:9970876..9970900 (25 bp)
TCTCGTGTTGCATAGACTGGGAAAA
LOC_Os10g20470
Os.5049.1.S1_at--75--6431Chr10:9970745..9970769 (25 bp)
GATCTTGGCAAAGGACAGGGTCTTC
LOC_Os10g20470
Os.5049.1.S1_at--1029--8751Chr10:9970693..9970717 (25 bp)
TGTAGTGTGCCACATCTCACATGCA
LOC_Os10g20470
Os.5049.1.S1_at--433--3751Chr10:9970678..9970702 (25 bp)
CTCACATGCAGTGCACCAGGCAATT
LOC_Os10g20470
Os.5049.1.S1_at--729--31Chr10:9970640..9970664 (25 bp)
ATTGGTCTATAGCACATCAGCATCA
LOC_Os10g20470
Os.5049.1.S1_at--661--10091Chr10:9970543..9970567 (25 bp)
TAGGAGCCGTCTTGTAACTTCTATT
LOC_Os10g20470
Os.5049.1.S1_at--616--9651Chr10:9970448..9970472 (25 bp)
TCAGCAATTTTGGACTTCGCGTGTT
LOC_Os10g20470
Os.5049.1.S1_at--195--3011Chr10:9970297..9970321 (25 bp)
AATGAGCAGCGCACAACATCTCGGA
LOC_Os10g20470
Target Sequence 
CTGTGGCTTGGCATCGTCTGCGGCAGCATCATCAAACTACTGGTGCTTATAATTGTCTCGTGTTGCATAGACTGGGAAAA
GGAGGCGATCTTGGCAAAGGACAGGGTCTTCAGCTCATCTCTTCCAGTAGCATGAANATGTAGTGTGCCACATCTCACAT
GCAGTGCACCAGGCAATTAATAGGATGCAAAATTGGTCTATAGCACATCAGCATCAATCATCATTCTAAAAAGCATACGA
ATTGATCATCGTTCGGAAAAGCATACGAATTGATCTGCAAGAGGAGAATAGGAGCCGTCTTGTAACTTCTATTGGGATTT
CGAAGAAGTCGAAGGAAAAACGTAGTTGAGGACTGCATCAATCACAATATGATCGAGGCCATGTCAGCAATTTTGGACTT
CGCGTGTTGTGTATNACTATTGTTTTTGCCAACAGTGTACAACTGAGCTCTAGTTAGGATAGGTATAGGTACAGTGAGAG
TATGTACCTAGTATGAATTTTGATGATTTTTGATGTCTCTGTCAGTGACATTGTAATGAGCAGCGCACAACATCTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis