Browse Element(s) Details


Os.7350.1.S1_at

Description gb:AK073245.1
DB_XREF= gi:32983268
TID=Os.7350.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7350 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative integral membrane protein (OSJNBa0045C13.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033012J16, full insert sequence.
FL= gb:AK073245.1 gb:AK103119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2045011/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20420NANA10+9939731..9940222hypothetical protein
LOC_Os10g20430Os.46306.1.S1_x_at6/1110+9941426..9946497transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20440OsAffx.20488.1.S1_at11/1110+9955022..9960740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20450Os.7350.1.S1_at11/1110+9961832..9964513MATE efflux family protein, expressed
LOC_Os10g20460OsAffx.30461.1.S1_at10/1110+9965696..9967221hypothetical protein
LOC_Os10g20470Os.5049.1.S1_at11/1110+9970261..9973000MATE efflux family protein, expressed
LOC_Os10g20470OsAffx.30725.5.S1_x_at1/1110+9970261..9973000MATE efflux family protein, expressed
LOC_Os10g20480Os.51856.1.S2_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S2_x_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S1_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_x_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.27435.1.S1_x_at3/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7350.1.S1_at--15--2831Chr10:9963561..9963585 (25 bp)
AAGTTGTCACCTACATTGCTCGTAT
LOC_Os10g20450
Os.7350.1.S1_at--1074--4791Chr10:9963578..9963602 (25 bp)
GCTCGTATGATACCTGTTCTAGCCA
LOC_Os10g20450
Os.7350.1.S1_at--399--6731Chr10:9963593..9963617 (25 bp)
GTTCTAGCCATATCATTCTTCATTG
LOC_Os10g20450
Os.7350.1.S1_at--722--51Chr10:9963614..9963638 (25 bp)
ATTGATGGGATGCACAGCGCTCTTT
LOC_Os10g20450
Os.7350.1.S1_at--780--1651Chr10:9963629..9963776 (25 bp)
AGCGCTCTTTCAGGAGTGCTCACTG
LOC_Os10g20450
Os.7350.1.S1_at--570--3991Chr10:9963799..9963823 (25 bp)
CGCACGGGTAAATCTTGGCGCATTT
LOC_Os10g20450
Os.7350.1.S1_at--803--8391Chr10:9963815..9963839 (25 bp)
GGCGCATTTTACTTGGCAGGCATTC
LOC_Os10g20450
Os.7350.1.S1_at--804--871Chr10:9963842..9963866 (25 bp)
ATGGCCGTCTTTCTTGCATTTGTGC
LOC_Os10g20450
Os.7350.1.S1_at--551--4671Chr10:9964043..9964067 (25 bp)
GCGGGAGCCTCAGCAAGCTTATCTT
LOC_Os10g20450
Os.7350.1.S1_at--603--31Chr10:9964227..9964251 (25 bp)
ATTGGTGTTCAGTTCATCTCTTCCT
LOC_Os10g20450
Os.7350.1.S1_at--1148--5391Chr10:9964335..9964359 (25 bp)
GAAGCTCGCCTTTCATCTTTAAGCA
LOC_Os10g20450
Target Sequence 
AAGTTGTCACCTACATTGCTCGTATGATACCTGTTCTAGCCATATCATTCTTCATTGATGGGATGCACAGCGCTCTTTCA
GGAGTGCTCACTGGATGTGGCAAGCAGAAGATCGGCGCACGGGTAAATCTTGGCGCATTTTACTTGGCAGGCATTCCTAT
GGCCGTCTTTCTTGCATTTGTGCTACATCTGAATGGAATGGGCCTTTGGCTTGGCATCGTTTGCGGGAGCCTCAGCAAGC
TTATCTTGCTCTTTTGGATCACAATGAGTATAAACTGGGAGAAGGAATCAACCAGGGCGAAAGAATTGGTGTTCAGTTCA
TCTCTTCCTGTAGCATGAAGAAAAACAATGCATCAGAATTTCATGATATGGTGCAATTGTTATTGTGAAAGCNACACAGA
ACCAAATGTTATGAAGCTCGCCTTTCATCTTTAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis