Browse Element(s) Details


Os.51856.1.S1_at

Description gb:AK064095.1
DB_XREF= gi:32974113
TID=Os.51856.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F03, full insert sequence.
FL= gb:AK064432.1 gb:AK064095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2048011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20450Os.7350.1.S1_at11/1110+9961832..9964513MATE efflux family protein, expressed
LOC_Os10g20460OsAffx.30461.1.S1_at10/1110+9965696..9967221hypothetical protein
LOC_Os10g20470Os.5049.1.S1_at11/1110+9970261..9973000MATE efflux family protein, expressed
LOC_Os10g20470OsAffx.30725.5.S1_x_at1/1110+9970261..9973000MATE efflux family protein, expressed
LOC_Os10g20480Os.51856.1.S2_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S2_x_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S1_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_x_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.27435.1.S1_x_at3/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20490OsAffx.22421.1.S1_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.4.S1_x_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.16244.1.S1_x_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.2.S1_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20500OsAffx.20487.1.S1_s_at11/1110+9998558..10000348hypothetical protein
LOC_Os10g20500OsAffx.20487.2.S1_at10/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.52284.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.29966.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20510Os.25521.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510OsAffx.18309.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_x_at10/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_at9/1110+10005999..10011288expressed protein
LOC_Os10g20520OsAffx.30462.1.S1_at11/1110+10012486..10012787hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51856.1.S1_at--568--4511Chr10:9990877..9990901 (25 bp)
GCCCACCACCGTCCGAGGTAGGTAT
LOC_Os10g20480
Os.51856.1.S1_at--28--1031Chr10:9990862..9990886 (25 bp)
AGGTAGGTATTCCTCACCGATGATG
LOC_Os10g20480
Os.51856.1.S1_at--815--6871Chr10:9990856..9990880 (25 bp)
GTATTCCTCACCGATGATGATGCAT
LOC_Os10g20480
Os.51856.1.S1_at--551--2711Chr12:21476999..21477019 (21 bp)
ATATGTGTTAGCTAGTGATGATGAA
NONE
Os.51856.1.S1_at--78--191Chr10:9990662..9990686 (25 bp)
ATTTATATGGCTATGATGACTTGTG
LOC_Os10g20480
Os.51856.1.S1_at--487--832Chr12:19332659..19332683 (25 bp)
ATGGTTGTGATGACTTGTGCATTTT
NONE
Os.51856.1.S1_at--723--4852Chr07:7690720..7690744 (25 bp)
GCTACTGATGAATTTTTATATGGCT
NONE
Os.51856.1.S1_at--410--10051Chr10:9990485..9990509 (25 bp)
TAGATATGGGCTGTGATGGATGAAT
LOC_Os10g20480
Os.51856.1.S1_at--1029--659Chr12:19332590..19332870 (25 bp)
ATGAATTATTGTGGGCTATGATGGA
NONE
Os.51856.1.S1_at--169--679Chr12:19332870..19332895 (25 bp)
ATGAATGGCAGTGATGATTGCTCAA
NONE
Os.51856.1.S1_at--713--6598Chr12:19332886..19332910 (25 bp)
GATTGCTCAAGAACATACCATTTTT
NONE
Target Sequence 
GCCCACCACCGTCCGAGGTAGGTATTCCTCACCGATGATGATGCATAATATGATGATTTATTGTGTAGATGTTATATGTG
ATGATTTGATGATTCGATGATAATGTTTGGATTCGATAATGTGATAGTGCGATTATTTNTTGATTCAATGTTTAGATGGT
AATGTCTATATATGATGACTTGTGCATTTTTATATGTGTTAGCTAGTGATGATGAATTTATATGGCTATGATGACTTGTG
CATTTNAATATGTGTTANCTAGTGATGAATTTTTATATGGTTGTGATGACTTGTGCATTTTTATATGTGTTAGCTACTGA
TGAATTTTTATATGGCTGTGATGGATGAATTATATGATTTTTGGGGGAGAATGGTATGTTGGGATTAATGTTTAGATATG
GGCTGTGATGGATGAATTATTGTGGGCTATGATGGATGAATGGCAGTGATGATTGCTCAAGAACATACCATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis