Browse Element(s) Details


OsAffx.30462.1.S1_at

Description tigr:9638.m01698
TID=OsAffx.30462.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2052011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20480Os.51856.1.S2_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S2_x_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S1_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_x_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.27435.1.S1_x_at3/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20490OsAffx.22421.1.S1_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.4.S1_x_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.16244.1.S1_x_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.2.S1_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20500OsAffx.20487.1.S1_s_at11/1110+9998558..10000348hypothetical protein
LOC_Os10g20500OsAffx.20487.2.S1_at10/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.52284.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.29966.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20510Os.25521.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510OsAffx.18309.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_x_at10/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_at9/1110+10005999..10011288expressed protein
LOC_Os10g20520OsAffx.30462.1.S1_at11/1110+10012486..10012787hypothetical protein
LOC_Os10g20530OsAffx.20486.1.S1_at11/1110+10018428..10019190hypothetical protein
LOC_Os10g20540OsAffx.20485.1.S1_at11/1110+10022517..10025503hypothetical protein
LOC_Os10g20550Os.9663.1.S1_at10/1110+10026433..10027152expressed protein
LOC_Os10g20560OsAffx.6710.1.S1_at10/1110+10028725..10029871hypothetical protein
LOC_Os10g20570NANA10+10035111..10039348retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30462.1.S1_at--688--6171Chr10:10012714..10012738 (25 bp)
GAGGAGAGGTAGACCGCACTGACAT
LOC_Os10g20520
OsAffx.30462.1.S1_at--1072--1012Chr02:14143049..14143181 (24 bp)
AGGTAGACCGCACTGACATTGTCAC
NONE
OsAffx.30462.1.S1_at--686--5671Chr10:10012694..10012718 (25 bp)
GACATTGTCACAGTAAACCAAGGTG
LOC_Os10g20520
OsAffx.30462.1.S1_at--12--7091Chr10:10012688..10012712 (25 bp)
GTCACAGTAAACCAAGGTGGCCTTA
LOC_Os10g20520
OsAffx.30462.1.S1_at--104--3431Chr10:10012684..10012708 (25 bp)
CAGTAAACCAAGGTGGCCTTAGGCG
LOC_Os10g20520
OsAffx.30462.1.S1_at--83--4391Chr10:10012677..10012701 (25 bp)
CCAAGGTGGCCTTAGGCGGTGGCGA
LOC_Os10g20520
OsAffx.30462.1.S1_at--206--10091Chr10:10012624..10012648 (25 bp)
TAGGTGACTTCAGCGACCTCGTTGG
LOC_Os10g20520
OsAffx.30462.1.S1_at--695--7371Chr10:10012621..10012645 (25 bp)
GTGACTTCAGCGACCTCGTTGGCGA
LOC_Os10g20520
OsAffx.30462.1.S1_at--435--10511Chr10:10012616..10012640 (25 bp)
TTCAGCGACCTCGTTGGCGACAGTG
LOC_Os10g20520
OsAffx.30462.1.S1_at--780--5811Chr10:10012610..10012634 (25 bp)
GACCTCGTTGGCGACAGTGCGGTAC
LOC_Os10g20520
OsAffx.30462.1.S1_at--36--4291Chr10:10012608..10012632 (25 bp)
CCTCGTTGGCGACAGTGCGGTACTC
LOC_Os10g20520
Target Sequence 
GAGGAGAGGTAGACCGCACTGACATTGTCACAGTAAACCAAGGTGGCCTTAGGCGGTGGCGAGTGGAGCTCATGGAGGAG
TTGGTGGAGCTAGGTGACTTCAGCGACCTCGTTGGCGACAGTGCGGTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis