Browse Element(s) Details


OsAffx.20487.2.S1_at

Description tigr:9638.m01694
TID=OsAffx.20487.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2050010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20480Os.51856.1.S2_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S2_x_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S1_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_x_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.27435.1.S1_x_at3/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20490OsAffx.22421.1.S1_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.4.S1_x_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.16244.1.S1_x_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.2.S1_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20500OsAffx.20487.1.S1_s_at11/1110+9998558..10000348hypothetical protein
LOC_Os10g20500OsAffx.20487.2.S1_at10/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.52284.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.29966.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20510Os.25521.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510OsAffx.18309.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_x_at10/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_at9/1110+10005999..10011288expressed protein
LOC_Os10g20520OsAffx.30462.1.S1_at11/1110+10012486..10012787hypothetical protein
LOC_Os10g20530OsAffx.20486.1.S1_at11/1110+10018428..10019190hypothetical protein
LOC_Os10g20540OsAffx.20485.1.S1_at11/1110+10022517..10025503hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20487.2.S1_at--521--6951NONE
GTAGAGGCGGTCCAGACATCATTGA
NONE
OsAffx.20487.2.S1_at--650--1411Chr10:9998844..9998868 (25 bp)
AGACATCATTGAGCTGGGCTAGGAA
LOC_Os10g20500
OsAffx.20487.2.S1_at--505--10011Chr10:9998810..9998834 (25 bp)
TAGCATGGGCCTACGTATTCAACTA
LOC_Os10g20500
OsAffx.20487.2.S1_at--995--9911Chr10:9998799..9998823 (25 bp)
TACGTATTCAACTAGCCCACACAAA
LOC_Os10g20500
OsAffx.20487.2.S1_at--86--6131Chr10:9998762..9998786 (25 bp)
GAGTGTCTGCAGTTGCAGCGCCACA
LOC_Os10g20500
OsAffx.20487.2.S1_at--695--7091Chr10:9998734..9998758 (25 bp)
GTCAGCCGGTCGCAACTTGAAACAT
LOC_Os10g20500
OsAffx.20487.2.S1_at--103--2411Chr10:9998715..9998739 (25 bp)
AAACATCGATGCCTCGACGGTGGAT
LOC_Os10g20500
OsAffx.20487.2.S1_at--145--9431Chr10:9998664..9998688 (25 bp)
TCGGTGCCTCGTCACTAGAGAGTGC
LOC_Os10g20500
OsAffx.20487.2.S1_at--1090--10031Chr10:9998649..9998673 (25 bp)
TAGAGAGTGCAGCAGTAGTCCCCAC
LOC_Os10g20500
OsAffx.20487.2.S1_at--780--3371Chr10:9998624..9998648 (25 bp)
CACCAGGAGCGGATCTAACGTGGAT
LOC_Os10g20500
OsAffx.20487.2.S1_at--879--9471Chr10:9998611..9998635 (25 bp)
TCTAACGTGGATGCGAGGATGCTAA
LOC_Os10g20500
Target Sequence 
GTAGAGGCGGTCCAGACATCATTGAGCTGGGCTAGGAAGGTTGCAGGTAGCATGGGCCTACGTATTCAACTAGCCCACAC
AAACACAAATGGGCCGAGTGTCTGCAGTTGCAGCGCCACAGCGGTCAGCCGGTCGCAACTTGAAACATCGATGCCTCGAC
GGTGGATGGTAGCCTGGGACTGTGGCTGGGCGCTCGGTGCCTCGTCACTAGAGAGTGCAGCAGTAGTCCCCACCACCAGG
AGCGGATCTAACGTGGATGCGAGGATGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20487.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis