Browse Element(s) Details


OsAffx.20485.1.S1_at

Description tigr:9638.m01700
TID=OsAffx.20485.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2054011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20500OsAffx.20487.1.S1_s_at11/1110+9998558..10000348hypothetical protein
LOC_Os10g20500OsAffx.20487.2.S1_at10/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.52284.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.29966.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20510Os.25521.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510OsAffx.18309.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_x_at10/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_at9/1110+10005999..10011288expressed protein
LOC_Os10g20520OsAffx.30462.1.S1_at11/1110+10012486..10012787hypothetical protein
LOC_Os10g20530OsAffx.20486.1.S1_at11/1110+10018428..10019190hypothetical protein
LOC_Os10g20540OsAffx.20485.1.S1_at11/1110+10022517..10025503hypothetical protein
LOC_Os10g20550Os.9663.1.S1_at10/1110+10026433..10027152expressed protein
LOC_Os10g20560OsAffx.6710.1.S1_at10/1110+10028725..10029871hypothetical protein
LOC_Os10g20570NANA10+10035111..10039348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20580Os.27691.1.S1_x_at2/1110+10039925..10041108retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20580Os.27691.2.S1_x_at1/1110+10039925..10041108retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20590OsAffx.30463.1.S1_at11/1110+10045464..10047228hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20485.1.S1_at--796--3291Chr10:10023201..10023225 (25 bp)
CAAAGGACCTATTCTGCCTGAAATA
LOC_Os10g20540
OsAffx.20485.1.S1_at--943--10232Chr10:10023226..10023250 (25 bp)
TTTGTGCAAATCTTTCTGCTTGGAC
LOC_Os10g20540
OsAffx.20485.1.S1_at--763--10591Chr10:10023239..10023263 (25 bp)
TTCTGCTTGGACGAGGCACGGAACT
LOC_Os10g20540
OsAffx.20485.1.S1_at--371--5451Chr10:10023270..10023294 (25 bp)
GAACGGCTGGCTATGTCGACCAGTA
LOC_Os10g20540
OsAffx.20485.1.S1_at--1007--7331Chr10:10023298..10023657 (25 bp)
GTGCAAGGGACAAAGGTGCTTCTTC
LOC_Os10g20540
OsAffx.20485.1.S1_at--1061--9551Chr10:10024993..10025017 (25 bp)
TCTTCTTCTCCGGTACAAGTGACAA
LOC_Os10g20540
OsAffx.20485.1.S1_at--201--8951Chr10:10025012..10025036 (25 bp)
TGACAACCCAAACACGGAGGACCGA
LOC_Os10g20540
OsAffx.20485.1.S1_at--213--3391Chr10:10025126..10025150 (25 bp)
CAGCCGCCCAGCAGTAGGTGGTAGA
LOC_Os10g20540
OsAffx.20485.1.S1_at--629--10691Chr10:10025333..10025357 (25 bp)
TTGCCACCGACAGCTCAAGGAGGGA
LOC_Os10g20540
OsAffx.20485.1.S1_at--185--6131Chr10:10025382..10025406 (25 bp)
GAGGGCCCTTGCTAGCGCCGTTGAT
LOC_Os10g20540
OsAffx.20485.1.S1_at--1017--10751Chr10:10025402..10025426 (25 bp)
TTGATCCCTTTTGGCCAGCCGGCAA
LOC_Os10g20540
Target Sequence 
CAAAGGACCTATTCTGCCTGAAATATTTGTGCAAATCTTTCTGCTTGGACGAGGCACGGAACTGGGGTGGAACGGCTGGC
TATGTCGACCAGTACTGGTGCAAGGGACAAAGGTGCTTCTTCTCCAACTCCAACAACCTCCTCTTCTTCTCCGGTACAAG
TGACAACCCAAACACGGAGGACCGACAAATTAGGGTCCCGGGGTGGGGTGGGGATGGGAGGAGGAGCGAGAAGAAAGGGG
AGGTCACCGGGATTAGAGGGATAGTCATGGGAGGCAGCCGCCCAGCAGTAGGTGGTAGAATAGGCAAACGGCGAGGCGCC
AGTGGCGGCATTAGAGCTGCGGGGATGGAGGAGGGCGTTGGGACAGTGTTGGTGCGACAAGGAGTCGCCAGAGACGAGGA
AGCCGGCGGCGGCAGGGGCATCTTGCCACCGACAGCTCAAGGAGGGAGGAGAGGGGGAGGAGAGCTGGCCAGAGGGCCCT
TGCTAGCGCCGTTGATCCCTTTTGGCCAGCCGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis