Browse Element(s) Details


OsAffx.1396.1.S1_x_at

Description gb:NM_187273.1
DB_XREF= gi:34901631
GEN=P0640E12.8
TID=OsAffx.1396.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0640E12.8 (P0640E12.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g310702/11expressed protein
LOC_Os04g289801/11hypothetical protein
LOC_Os02g379801/11expressed protein
LOC_Os03g424801/11expressed protein
LOC_Os01g581601/11hypothetical protein
LOC_Os03g075101/11hypothetical protein
LOC_Os04g378901/11hypothetical protein
LOC_Os05g354441/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31030Os.48724.1.S1_at11/118+19024364..19029010HOTHEAD protein precursor, putative, expressed
LOC_Os08g31040OsAffx.29445.1.S1_at11/118+19031295..19033871expressed protein
LOC_Os08g31060OsAffx.29446.1.S1_at11/118+19040682..19048021Phospholipase D. Active site motif family protein, expressed
LOC_Os08g31070OsAffx.17257.1.S1_at11/118+19051528..19053502expressed protein
LOC_Os08g31070OsAffx.1396.1.S1_x_at2/118+19051528..19053502expressed protein
LOC_Os08g31080OsAffx.17258.1.S1_at11/118+19057948..19059318expressed protein
LOC_Os08g31090OsAffx.17259.1.S1_s_at11/118+19073822..19075071expressed protein
LOC_Os08g31090Os.6304.1.S1_at9/118+19073822..19075071expressed protein
LOC_Os08g31100Os.48015.1.A1_x_at1/118+19078097..19078542retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1396.1.S1_x_at--214--1091Chr07:17263730..17263754 (25 bp)
AGGGCGAGCTCGAGCCAGTGGCAGC
NONE
OsAffx.1396.1.S1_x_at--282--5871Chr07:17263719..17263743 (25 bp)
GAGCCAGTGGCAGCGCTGTGGAGAC
NONE
OsAffx.1396.1.S1_x_at--964--8491Chr07:17263712..17263736 (25 bp)
TGGCAGCGCTGTGGAGACCGTGGTT
NONE
OsAffx.1396.1.S1_x_at--1023--77316Chr09:16953958..16953983 (25 bp)
GGTGGTGAGCATCGGTGTGTCAGCC
NONE
OsAffx.1396.1.S1_x_at--312--7452Chr07:17263455..17263478 (24 bp)
GTGTCAGCCGTGGACTCGCCGGTGA
NONE
OsAffx.1396.1.S1_x_at--479--2671Chr07:17263315..17263339 (25 bp)
AAGCCCAGTCTTGGGCTCTTTTGAG
NONE
OsAffx.1396.1.S1_x_at--749--4692Chr07:17263274..17263298 (25 bp)
GCGGCAGTTTTCCATCGCTTCTCTC
NONE
OsAffx.1396.1.S1_x_at--927--1195Chr08:19052088..19052109 (22 bp)
AGTTTTCCATCGCTTCTCTCCTTGG
LOC_Os08g31070
OsAffx.1396.1.S1_x_at--148--105913Chr08:19052098..19052361 (25 bp)
TTCTCTCCTTGGAGACGTCGTTTAG
LOC_Os08g31070
OsAffx.1396.1.S1_x_at--924--8512Chr07:17263247..17263271 (25 bp)
TGGAGACGTCGTTTAGACATCCCCT
NONE
OsAffx.1396.1.S1_x_at--268--5772Chr07:17263243..17263267 (25 bp)
GACGTCGTTTAGACATCCCCTTGCT
NONE
Target Sequence 
AGGGCGAGCTCGAGCCAGTGGCAGCGCTGTGGAGACCGTGGTTGTGAGGTTGAGTGGTGGTGAGCATCGGTGTGTCAGCC
GTGGACTCGCCGGTGAGTGGTTGCCGGGTGAAAGCCCAGTCTTGGGCTCTTTTGAGCCCCCGACGGACGGCGGCGGCAGT
TTTCCATCGCTTCTCTCCTTGGAGACGTCGTTTAGACATCCCCTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1396.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis