Browse Element(s) Details


OsAffx.17259.1.S1_s_at

Description tigr:9636.m03105
TID=OsAffx.17259.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3109011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31070OsAffx.17257.1.S1_at11/118+19051528..19053502expressed protein
LOC_Os08g31070OsAffx.1396.1.S1_x_at2/118+19051528..19053502expressed protein
LOC_Os08g31080OsAffx.17258.1.S1_at11/118+19057948..19059318expressed protein
LOC_Os08g31090OsAffx.17259.1.S1_s_at11/118+19073822..19075071expressed protein
LOC_Os08g31090Os.6304.1.S1_at9/118+19073822..19075071expressed protein
LOC_Os08g31100Os.48015.1.A1_x_at1/118+19078097..19078542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g31110Os.50396.1.S1_at11/118+19082987..19084967fertility restorer homologue, putative, expressed
LOC_Os08g31120OsAffx.31487.1.S1_at11/118+19087627..19088273hypothetical protein
LOC_Os08g31130Os.53050.1.S1_at11/118+19089242..19094679Integral membrane protein DUF6 containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17259.1.S1_s_at--285--2611Chr08:19074582..19074606 (25 bp)
AACGCGCGGGCCGAGCGGTTCATCA
LOC_Os08g31090
OsAffx.17259.1.S1_s_at--81--7571Chr08:19074589..19074613 (25 bp)
GGGCCGAGCGGTTCATCAAGCAGTT
LOC_Os08g31090
OsAffx.17259.1.S1_s_at--233--4511Chr08:19074591..19074615 (25 bp)
GCCGAGCGGTTCATCAAGCAGTTCA
LOC_Os08g31090
OsAffx.17259.1.S1_s_at--663--5891Chr08:19074594..19074618 (25 bp)
GAGCGGTTCATCAAGCAGTTCAGGG
LOC_Os08g31090
OsAffx.17259.1.S1_s_at--938--4671Chr08:19074596..19074620 (25 bp)
GCGGTTCATCAAGCAGTTCAGGGAG
LOC_Os08g31090
OsAffx.17259.1.S1_s_at--552--10531Chr08:19074600..19074624 (25 bp)
TTCATCAAGCAGTTCAGGGAGGACC
LOC_Os08g31090
OsAffx.17259.1.S1_s_at--759--3551Chr08:19074602..19074626 (25 bp)
CATCAAGCAGTTCAGGGAGGACCTC
LOC_Os08g31090
OsAffx.17259.1.S1_s_at--998--9711Chr08:19074604..19074628 (25 bp)
TCAAGCAGTTCAGGGAGGACCTCAA
LOC_Os08g31090
OsAffx.17259.1.S1_s_at--1073--1211Chr08:19074610..19074634 (25 bp)
AGTTCAGGGAGGACCTCAAGCTGCA
LOC_Os08g31090
OsAffx.17259.1.S1_s_at--675--2691Chr08:19074627..19074651 (25 bp)
AAGCTGCAGCGCATCAACTCCATCA
LOC_Os08g31090
OsAffx.17259.1.S1_s_at--235--1611Chr08:19074628..19074652 (25 bp)
AGCTGCAGCGCATCAACTCCATCAT
LOC_Os08g31090
Target Sequence 
AACGCGCGGGCCGAGCGGTTCATCAAGCAGTTCAGGGAGGACCTCAAGCTGCAGCGCATCAACTCCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17259.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis