Browse Element(s) Details


Os.50396.1.S1_at

Description gb:AK121035.1
DB_XREF= gi:37990658
TID=Os.50396.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050N04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050N04, full insert sequence.
FL= gb:AK121035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3111011/11fertility restorer homologue, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31080OsAffx.17258.1.S1_at11/118+19057948..19059318expressed protein
LOC_Os08g31090OsAffx.17259.1.S1_s_at11/118+19073822..19075071expressed protein
LOC_Os08g31090Os.6304.1.S1_at9/118+19073822..19075071expressed protein
LOC_Os08g31100Os.48015.1.A1_x_at1/118+19078097..19078542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g31110Os.50396.1.S1_at11/118+19082987..19084967fertility restorer homologue, putative, expressed
LOC_Os08g31120OsAffx.31487.1.S1_at11/118+19087627..19088273hypothetical protein
LOC_Os08g31130Os.53050.1.S1_at11/118+19089242..19094679Integral membrane protein DUF6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50396.1.S1_at--507--8271Chr08:19084418..19084442 (25 bp)
GGCATCAAATCTACGGTGAGAACAT
LOC_Os08g31110
Os.50396.1.S1_at--292--5491Chr08:19084437..19084461 (25 bp)
GAACATACCATCAACTTATTAGCGG
LOC_Os08g31110
Os.50396.1.S1_at--423--2051Chr08:19084450..19084474 (25 bp)
ACTTATTAGCGGATTAGGTGGTGCA
LOC_Os08g31110
Os.50396.1.S1_at--862--2971Chr08:19084523..19084547 (25 bp)
AATGTTGTACCCAGTAATGCAATAC
LOC_Os08g31110
Os.50396.1.S1_at--746--9731Chr08:19084549..19084573 (25 bp)
TAATATCATGGTTGAGGCCTACTCA
LOC_Os08g31110
Os.50396.1.S1_at--145--311Chr08:19084672..19084696 (25 bp)
ATAGCTGTATAGCAAGTCCAACATG
LOC_Os08g31110
Os.50396.1.S1_at--290--7931Chr08:19084736..19084760 (25 bp)
GGATTAGTTTGATTGTTTGCCTTAT
LOC_Os08g31110
Os.50396.1.S1_at--622--6851Chr08:19084750..19084774 (25 bp)
GTTTGCCTTATCTTTGTGAACCATT
LOC_Os08g31110
Os.50396.1.S1_at--463--7931Chr08:19084778..19084802 (25 bp)
GGATTGAATTGTCGAATACCATATT
LOC_Os08g31110
Os.50396.1.S1_at--208--4331Chr08:19084796..19084820 (25 bp)
CCATATTCTATTTTTTGTCCCACAA
LOC_Os08g31110
Os.50396.1.S1_at--1065--10231Chr08:19084809..19084833 (25 bp)
TTTGTCCCACAAATCCAAAATGGAG
LOC_Os08g31110
Target Sequence 
GGCATCAAATCTACGGTGAGAACATACCATCAACTTATTAGCGGATTAGGTGGTGCAGGGAGATTAAATGAAATGGAATA
TCTGTATCAGAAAATGATGCAAAATAATGTTGTACCCAGTAATGCAATACATAATATCATGGTTGAGGCCTACTCAAAAT
ATGGAAATGAAATTAAGGCAGAAGATCTGAGGAAGGAAATGTTACAGAAAAGGAACAACCATGATGACACATGAGAAAAA
TAATGGTGAGACGAATAGCTGTATAGCAAGTCCAACATGAAACTTTTGATGTTGATCATAATGAGCCAATGTTAGAGTGG
ATTAGTTTGATTGTTTGCCTTATCTTTGTGAACCATTGAAGGATTGAATTGTCGAATACCATATTCTATTTTTTGTCCCA
CAAATCCAAAATGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis