Browse Element(s) Details


OsAffx.31487.1.S1_at

Description tigr:9636.m03108
TID=OsAffx.31487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3112011/11hypothetical protein
LOC_Os11g453504/11hypothetical protein
LOC_Os12g317704/11expressed protein
LOC_Os05g503303/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31090OsAffx.17259.1.S1_s_at11/118+19073822..19075071expressed protein
LOC_Os08g31090Os.6304.1.S1_at9/118+19073822..19075071expressed protein
LOC_Os08g31100Os.48015.1.A1_x_at1/118+19078097..19078542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g31110Os.50396.1.S1_at11/118+19082987..19084967fertility restorer homologue, putative, expressed
LOC_Os08g31120OsAffx.31487.1.S1_at11/118+19087627..19088273hypothetical protein
LOC_Os08g31130Os.53050.1.S1_at11/118+19089242..19094679Integral membrane protein DUF6 containing protein, expressed
LOC_Os08g31140OsAffx.17261.1.S1_at11/118+19111548..19112696heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os08g31140Os.8543.1.S1_at3/118+19111548..19112696heavy-metal-associated domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31487.1.S1_at--1065--5651Chr08:19087701..19087725 (25 bp)
GACAGGTGCATTGTGGCGGACAGAT
LOC_Os08g31120
OsAffx.31487.1.S1_at--672--3391Chr08:19087735..19087759 (25 bp)
CAGCGGGCAGCTGCTAGTGCGGCTG
LOC_Os08g31120
OsAffx.31487.1.S1_at--665--3933Chr12:19090943..19090967 (25 bp)
CGGACTTGGCCGAGCTCTGCGCCGT
LOC_Os12g31770
OsAffx.31487.1.S1_at--140--5894Chr12:19091018..19091042 (25 bp)
GAGCGGCTCCATCGCCATTGTGATT
LOC_Os12g31770
OsAffx.31487.1.S1_at--987--3814Chr12:19091024..19091048 (25 bp)
CTCCATCGCCATTGTGATTTGTGCA
LOC_Os12g31770
OsAffx.31487.1.S1_at--673--10834Chr11:26929119..26929143 (25 bp)
TTGTGCATTGCATTTGATCGATTTG
LOC_Os11g45350
OsAffx.31487.1.S1_at--333--10254Chr11:26929131..26929155 (25 bp)
TTTGATCGATTTGTTGCCGTTGATT
LOC_Os11g45350
OsAffx.31487.1.S1_at--870--10773Chr12:19091088..19091147 (25 bp)
TTGATGTGTGTGCAGAACAGGACCT
LOC_Os12g31770
OsAffx.31487.1.S1_at--1010--9571Chr08:19088088..19088112 (25 bp)
TCTTGCAGCGCGGAACTCATGGTCT
LOC_Os08g31120
OsAffx.31487.1.S1_at--1045--4551Chr08:19088095..19088119 (25 bp)
GCGCGGAACTCATGGTCTTGCTGGT
LOC_Os08g31120
OsAffx.31487.1.S1_at--628--2011Chr08:19088102..19088126 (25 bp)
ACTCATGGTCTTGCTGGTCCTGCAG
LOC_Os08g31120
Target Sequence 
GACAGGTGCATTGTGGCGGACAGATGCGTGGCGGCAGCGGGCAGCTGCTAGTGCGGCTGCAGCGTCGGTGGTGCGGACTT
GGCCGAGCTCTGCGCCGTGGCTGCGGTGGCGGCGTTGCAGAGCGGCTGCAGCAGCGGGTGGTGGTGGCGAGCGGCTCCAT
CGCCATTGTGATTTGTGCATTGCATTTGATCGATTTGTTGCCGTTGATTGGTTTCTTGTTGATGTGTGTGCAGAACAGGA
CCTGCAGACCGCGGCCTGCGGCGGCGGCGACGGCGCCGTGGGGCTCAGCTTCGAGACGCACCACGGCGGCAGCGTGGCGC
CTTCGCCGGAGTTCGCGGCGTGCGCGGCGAGCTCTTGCAGCGCGGAACTCATGGTCTTGCTGGTCCTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis