Browse Element(s) Details


Os.8543.1.S1_at

Description gb:AU096789
DB_XREF= gi:8859471
DB_XREF=AU096789
CLONE=S15649
TID=Os.8543.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.8543 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g311403/11heavy-metal-associated domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31120OsAffx.31487.1.S1_at11/118+19087627..19088273hypothetical protein
LOC_Os08g31130Os.53050.1.S1_at11/118+19089242..19094679Integral membrane protein DUF6 containing protein, expressed
LOC_Os08g31140OsAffx.17261.1.S1_at11/118+19111548..19112696heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os08g31140Os.8543.1.S1_at3/118+19111548..19112696heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os08g31150NANA8+19116801..19124338retrotransposon protein, putative, unclassified
LOC_Os08g31160NANA8+19124570..19125088hypothetical protein
LOC_Os08g31170OsAffx.29448.1.S1_at11/118+19133989..19134816C1-like domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8543.1.S1_at--779--9151Chr08:19112631..19112655 (25 bp)
TGCGCCGTCATGTGAACCAACATAT
LOC_Os08g31140
Os.8543.1.S1_at--454--5431Chr08:19112644..19112668 (25 bp)
GAACCAACATATATCTATCATCTCG
LOC_Os08g31140
Os.8543.1.S1_at--654--9611Chr08:19112661..19112685 (25 bp)
TCATCTCGATCGAACCATTAGCAAT
LOC_Os08g31140
Os.8543.1.S1_at--860--1731Chr08:19112674..19112698 (25 bp)
ACCATTAGCAATCGGTTCATGAACT
NONE
Os.8543.1.S1_at--688--6551Chr08:19112705..19112729 (25 bp)
GATTAATACTATGGTGGGCGGATAA
NONE
Os.8543.1.S1_at--266--271NONE
ATATGTGATGTAGAGGCTGGAGTTT
NONE
Os.8543.1.S1_at--378--10391NONE
TTTTGCTATGGAGAGGATTTGGTGC
NONE
Os.8543.1.S1_at--288--6551NONE
GATTTTGGAACTTGTTTCTGAGCTG
NONE
Os.8543.1.S1_at--197--2511NONE
AACTTGTTTCTGAGCTGACCAGAGT
NONE
Os.8543.1.S1_at--402--8911NONE
TGAGCTGACCAGAGTGGATTGCTGA
NONE
Os.8543.1.S1_at--5--8751Chr08:19112861..19112885 (25 bp)
TGTAAGTTTATTTGCATCTCTAATA
NONE
Target Sequence 
TGCGCCGTCATGTGAACCAACATATATCTATCATCTCGATCGAACCATTAGCAATCGGTTCATGAACTAAACTAGATTAA
TACTATGGTGGGCGGATAATATGTGATGTAGAGGCTGGAGTTTGAATTCCNATTNATCGGANAGGAGGANAAAACNACGA
NATGAGTTTTGCTATGGAGAGGATTTGGTGCCGATGATTTTGGAACTTGTTTCTGAGCTGACCAGAGTGGATTGCTGANA
TTGTGACTTTAGTATATGTAAGTTTATTTGCATCTCTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis