Browse Element(s) Details


OsAffx.17261.1.S1_at

Description tigr:9636.m03110
TID=OsAffx.17261.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Heavy-metal-associated domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3114011/11heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g200001/11heavy-metal-associated domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31120OsAffx.31487.1.S1_at11/118+19087627..19088273hypothetical protein
LOC_Os08g31130Os.53050.1.S1_at11/118+19089242..19094679Integral membrane protein DUF6 containing protein, expressed
LOC_Os08g31140OsAffx.17261.1.S1_at11/118+19111548..19112696heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os08g31140Os.8543.1.S1_at3/118+19111548..19112696heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os08g31150NANA8+19116801..19124338retrotransposon protein, putative, unclassified
LOC_Os08g31160NANA8+19124570..19125088hypothetical protein
LOC_Os08g31170OsAffx.29448.1.S1_at11/118+19133989..19134816C1-like domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17261.1.S1_at--751--6931Chr08:19111830..19111854 (25 bp)
GTAGAGTTTGCACTTGATTAGTAAC
LOC_Os08g31140
OsAffx.17261.1.S1_at--93--6551Chr08:19111845..19111869 (25 bp)
GATTAGTAACTTTCATTAGAGGCAA
LOC_Os08g31140
OsAffx.17261.1.S1_at--685--2711Chr08:19111877..19111901 (25 bp)
AAGCATGGGAGGCACGCTGCACTAC
LOC_Os08g31140
OsAffx.17261.1.S1_at--1055--4751Chr08:19111892..19111916 (25 bp)
GCTGCACTACCTGTCTGATCTGCTG
LOC_Os08g31140
OsAffx.17261.1.S1_at--559--1771Chr08:19111900..19111924 (25 bp)
ACCTGTCTGATCTGCTGCTGGGTGG
LOC_Os08g31140
OsAffx.17261.1.S1_at--759--3391Chr08:19111925..19111949 (25 bp)
CAGCAGCGGCAAGACTAGCCACAAG
LOC_Os08g31140
OsAffx.17261.1.S1_at--520--5151Chr08:19111933..19111957 (25 bp)
GCAAGACTAGCCACAAGAAGAAGAG
LOC_Os08g31140
OsAffx.17261.1.S1_at--177--1331Chr08:19111954..19111978 (25 bp)
AGAGGCAGTTCAACACGGTGGAGCT
LOC_Os08g31140
OsAffx.17261.1.S1_at--186--10511Chr08:19111962..19111986 (25 bp)
TTCAACACGGTGGAGCTGAAGGTGA
LOC_Os08g31140
OsAffx.17261.1.S1_at--134--7772Chr09:11975655..11975679 (25 bp)
GGTGAGGATGGACTGCGACGGCTGC
LOC_Os09g20000
OsAffx.17261.1.S1_at--920--5891Chr08:19112007..19112031 (25 bp)
GAGCTCAAGGTCAGGAACACCCTTG
LOC_Os08g31140
Target Sequence 
GTAGAGTTTGCACTTGATTAGTAACTTTCATTAGAGGCAAAGTTGAGAAGCATGGGAGGCACGCTGCACTACCTGTCTGA
TCTGCTGCTGGGTGGCAGCAGCGGCAAGACTAGCCACAAGAAGAAGAGGCAGTTCAACACGGTGGAGCTGAAGGTGAGGA
TGGACTGCGACGGCTGCGAGCTCAAGGTCAGGAACACCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis