Browse Element(s) Details


OsAffx.29446.1.S1_at

Description tigr:9636.m03102
TID=OsAffx.29446.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to phospholipase D2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3106011/11Phospholipase D. Active site motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31010NANA8+19012410..19017302retrotransposon protein, putative, unclassified
LOC_Os08g31020OsAffx.29444.1.S1_at11/118+19020281..19021350hypothetical protein
LOC_Os08g31030Os.48724.1.S1_at11/118+19024364..19029010HOTHEAD protein precursor, putative, expressed
LOC_Os08g31040OsAffx.29445.1.S1_at11/118+19031295..19033871expressed protein
LOC_Os08g31060OsAffx.29446.1.S1_at11/118+19040682..19048021Phospholipase D. Active site motif family protein, expressed
LOC_Os08g31070OsAffx.17257.1.S1_at11/118+19051528..19053502expressed protein
LOC_Os08g31070OsAffx.1396.1.S1_x_at2/118+19051528..19053502expressed protein
LOC_Os08g31080OsAffx.17258.1.S1_at11/118+19057948..19059318expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0009395biological_processphospholipid catabolism
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0030136cellular_componentclathrin-coated vesicle
GO:0004630molecular_functionphospholipase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29446.1.S1_at--1113--5991Chr08:19041220..19041244 (25 bp)
GAGAGTACATTATATGGACCAGGGA
LOC_Os08g31060
OsAffx.29446.1.S1_at--33--791Chr08:19041207..19041231 (25 bp)
ATGGACCAGGGATATTGACAAGATA
LOC_Os08g31060
OsAffx.29446.1.S1_at--470--8131Chr08:19041181..19041205 (25 bp)
GGACATTTGACAAGAACACGATGAT
LOC_Os08g31060
OsAffx.29446.1.S1_at--229--5551Chr08:19041150..19041174 (25 bp)
GAAACCGTTGACAATCGATCGCCAT
LOC_Os08g31060
OsAffx.29446.1.S1_at--1123--7791Chr08:19041088..19041112 (25 bp)
GGTCGGCGAACGTGAACCAGCGATC
LOC_Os08g31060
OsAffx.29446.1.S1_at--877--7351Chr08:19041077..19041101 (25 bp)
GTGAACCAGCGATCCATGGACGGCG
LOC_Os08g31060
OsAffx.29446.1.S1_at--420--8531Chr08:19041007..19041031 (25 bp)
TGGACACCCCGAACTCGTGGCCGAG
LOC_Os08g31060
OsAffx.29446.1.S1_at--34--8211Chr08:19040980..19041004 (25 bp)
GGCAAGTGCACCAGTTCCGGCTCGC
LOC_Os08g31060
OsAffx.29446.1.S1_at--822--9951Chr08:19040888..19040912 (25 bp)
TACCCGTCGCGCCATGGGTGCATGA
LOC_Os08g31060
OsAffx.29446.1.S1_at--198--1511Chr08:19040839..19040863 (25 bp)
AGCACTGGGACATGTACGCGAGCGA
LOC_Os08g31060
OsAffx.29446.1.S1_at--422--8751Chr08:19040827..19040851 (25 bp)
TGTACGCGAGCGACAAGTTCCAGGG
LOC_Os08g31060
Target Sequence 
GAGAGTACATTATATGGACCAGGGATATTGACAAGATATGGACATTTGACAAGAACACGATGATCAAAACGAAACCGTTG
ACAATCGATCGCCATGATTTTTTTGCAGTGGACGACGAGTACATCATCGTGGGGTCGGCGAACGTGAACCAGCGATCCAT
GGACGGCGGCAGGGACACGGAGATGGCGATGGGCGCGTACCAGCCGCGGCACCTGGACACCCCGAACTCGTGGCCGAGGG
GGCAAGTGCACCAGTTCCGGCTCGCGCTGTGGCGGGAGCACCTCGGCCAGGCGGCGTTCCAGGCCGCCGCCGCCGCCGGC
GACGACATGATCTACCCGTCGCGCCATGGGTGCATGAGCCGGGTGAACCAGGCCGCGCGGCAGCACTGGGACATGTACGC
GAGCGACAAGTTCCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis