Browse Element(s) Details


Os.48724.1.S1_at

Description gb:AK068301.1
DB_XREF= gi:32978319
TID=Os.48724.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.48724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146O05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146O05, full insert sequence.
FL= gb:AK068301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3103011/11HOTHEAD protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30990NANA8+18997228..19004789retrotransposon protein, putative, unclassified
LOC_Os08g31000Os.17407.1.S1_at11/118+19006833..19009834expressed protein
LOC_Os08g31010NANA8+19012410..19017302retrotransposon protein, putative, unclassified
LOC_Os08g31020OsAffx.29444.1.S1_at11/118+19020281..19021350hypothetical protein
LOC_Os08g31030Os.48724.1.S1_at11/118+19024364..19029010HOTHEAD protein precursor, putative, expressed
LOC_Os08g31040OsAffx.29445.1.S1_at11/118+19031295..19033871expressed protein
LOC_Os08g31060OsAffx.29446.1.S1_at11/118+19040682..19048021Phospholipase D. Active site motif family protein, expressed
LOC_Os08g31070OsAffx.17257.1.S1_at11/118+19051528..19053502expressed protein
LOC_Os08g31070OsAffx.1396.1.S1_x_at2/118+19051528..19053502expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007267biological_processcell-cell signaling
GO:0005576cellular_componentextracellular region
GO:0016832molecular_functionaldehyde-lyase activity
GO:0046593molecular_functionmandelonitrile lyase activity
GO:0050660molecular_functionFAD binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48724.1.S1_at--170--1991Chr08:19024992..19025016 (25 bp)
ACTAATTTTACCCTCAATGGTGGTG
LOC_Os08g31030
Os.48724.1.S1_at--444--5651Chr08:19024896..19024920 (25 bp)
GACAGCACATCCATGGAGCAGTTTT
LOC_Os08g31030
Os.48724.1.S1_at--595--5031Chr08:19024879..19024903 (25 bp)
GCAGTTTTGCAGAGACACAGTGGTC
LOC_Os08g31030
Os.48724.1.S1_at--25--1111Chr08:19024861..19024885 (25 bp)
AGTGGTCACCATCTGGCATTACCAT
LOC_Os08g31030
Os.48724.1.S1_at--563--7491Chr08:19024815..19024839 (25 bp)
GTGGTTGACCAACAATACCGTGTGA
LOC_Os08g31030
Os.48724.1.S1_at--397--9971Chr08:19024800..19024824 (25 bp)
TACCGTGTGATTGGTGTCTCAGGCC
LOC_Os08g31030
Os.48724.1.S1_at--872--7151Chr08:19024785..19024809 (25 bp)
GTCTCAGGCCTTCGTGTGATCGATG
LOC_Os08g31030
Os.48724.1.S1_at--506--7391Chr08:19024770..19024794 (25 bp)
GTGATCGATGGGTCGACCTTATTTA
LOC_Os08g31030
Os.48724.1.S1_at--670--6071Chr08:19024556..19024580 (25 bp)
GAGTATAACTGATTCTTGGACCTTA
LOC_Os08g31030
Os.48724.1.S1_at--1062--971Chr08:19024442..19024466 (25 bp)
AGGAGTTTTCGTTTGTGTTCTAGAT
LOC_Os08g31030
Os.48724.1.S1_at--85--5651Chr08:19024385..19024409 (25 bp)
GACACCATTGTTTCTGCATTATGAA
LOC_Os08g31030
Target Sequence 
ACTAATTTTACCCTCAATGGTGGTGGATATCCAATGGAAGTGNTGCTCAACATGAGTGTAACAGCAAACATNAACTNTGA
TACCCANAGCACACAAATGACAGCACATCCATGGAGCAGTTTTGCAGAGACACAGTGGTCACCATCTGGCATTACCATGG
CGGATGCCATGTGGGCAAGGTGGTTGACCAACAATACCGTGTGATTGGTGTCTCAGGCCTTCGTGTGATCGATGGGTCGA
CCTTATTTAGGTCACCAGGAACCAACCCGCAAGCCACAGTCATGATGATGGGCAGATACATGGGAGTGAAGATTCTAAGA
AGAAGATTAGGACGAGCTGCTGGAGTATAACTGATTCTTGGACCTTATTGATTATGTAAGAATGTGACTTAGGAAAAGAA
AAGTATATAGTAATTTTTGAAGCAATTCAATATCATATCACCACAGAAAGAAAATTAGGAGTTTTCGTTTGTGTTCTAGA
TGTGGAAATCTATGGCATGTAATATCATCTATTGACACCATTGTTTCTGCATTATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis