Browse Element(s) Details


Os.17407.1.S1_at

Description gb:AK121508.1
DB_XREF= gi:37991131
TID=Os.17407.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17407 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023C05, full insert sequence.
FL= gb:AK121508.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3100011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30960NANA8+18980891..18982617hypothetical protein
LOC_Os08g30970OsAffx.17255.1.S1_at11/118+18986248..18987104hypothetical protein
LOC_Os08g30980OsAffx.29443.1.S1_at11/118+18991590..18994885hypothetical protein
LOC_Os08g30990NANA8+18997228..19004789retrotransposon protein, putative, unclassified
LOC_Os08g31000Os.17407.1.S1_at11/118+19006833..19009834expressed protein
LOC_Os08g31010NANA8+19012410..19017302retrotransposon protein, putative, unclassified
LOC_Os08g31020OsAffx.29444.1.S1_at11/118+19020281..19021350hypothetical protein
LOC_Os08g31030Os.48724.1.S1_at11/118+19024364..19029010HOTHEAD protein precursor, putative, expressed
LOC_Os08g31040OsAffx.29445.1.S1_at11/118+19031295..19033871expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17407.1.S1_at--860--1791Chr08:19009244..19009268 (25 bp)
ACCGCAAACACGCTAGCATTCAGTT
LOC_Os08g31000
Os.17407.1.S1_at--333--7651Chr08:19009317..19009341 (25 bp)
GGGAGATCTCCATCCGCTACGTATA
LOC_Os08g31000
Os.17407.1.S1_at--1122--7811Chr08:19009357..19009381 (25 bp)
GGTCATGATGCGGAGCTCAGCTACA
LOC_Os08g31000
Os.17407.1.S1_at--2--10851Chr08:19009403..19009427 (25 bp)
TTGGGCATGTACGTCGTGCTAGCTC
LOC_Os08g31000
Os.17407.1.S1_at--344--3771Chr08:19009434..19009458 (25 bp)
CTCTCACCATGGCAAAGTCTGTCTG
LOC_Os08g31000
Os.17407.1.S1_at--132--10591Chr08:19009470..19009494 (25 bp)
TTCTCTCCTTCTTGTCTGCATGTAT
LOC_Os08g31000
Os.17407.1.S1_at--1138--10131Chr08:19009513..19009537 (25 bp)
TATCGTGGCAAACTCGGTGCGTATT
LOC_Os08g31000
Os.17407.1.S1_at--228--2731Chr08:19009566..19009590 (25 bp)
AAGCAGCGCCAGTCCTAAAATTCAT
LOC_Os08g31000
Os.17407.1.S1_at--793--751Chr08:19009611..19009635 (25 bp)
ATGTAATTATCTTTGGCTTGCCGGC
LOC_Os08g31000
Os.17407.1.S1_at--441--3631Chr08:19009627..19009651 (25 bp)
CTTGCCGGCGGTGTTGAAGATTCGT
LOC_Os08g31000
Os.17407.1.S1_at--779--351Chr08:19009689..19009713 (25 bp)
ATAAGATTATCTTTCGCCGGGCTCT
LOC_Os08g31000
Target Sequence 
ACCGCAAACACGCTAGCATTCAGTTGCTCTCTGCTAGCTACCGTCAGCCTGCTCTACTCTGGGATGCCGTCGCGGGAGAT
CTCCATCCGCTACGTATACCAGTCCNTATCGTTGGTCATGATGCGGAGCTCAGCTACAAGCCTGGTCGCCGCCTTCGCCT
TGGGCATGTACGTCGTGCTAGCTCCCGTTGCTCTCACCATGGCAAAGTCTGTCTGCGCCATCACTTTTCTCTCCTTCTTG
TCTGCATGTATGGAGGTCCGGAGGCCCCTTATCGTGGCAAACTCGGTGCGTATTAGAGTTGGAATCTGGGCAGCGAGGTA
TCAAGCAGCGCCAGTCCTAAAATTCATCGGGAAAAGATTCTGGTCCTATGTAATTATCTTTGGCTTGCCGGCGGTGTTGA
AGATTCGTGGAACCCAATGACTTTGTGTAATTATCTTATCTGCTAATAAGATTATCTTTCGCCGGGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis