Browse Element(s) Details


OsAffx.29444.1.S1_at

Description tigr:9636.m03098
TID=OsAffx.29444.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3102011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30990NANA8+18997228..19004789retrotransposon protein, putative, unclassified
LOC_Os08g31000Os.17407.1.S1_at11/118+19006833..19009834expressed protein
LOC_Os08g31010NANA8+19012410..19017302retrotransposon protein, putative, unclassified
LOC_Os08g31020OsAffx.29444.1.S1_at11/118+19020281..19021350hypothetical protein
LOC_Os08g31030Os.48724.1.S1_at11/118+19024364..19029010HOTHEAD protein precursor, putative, expressed
LOC_Os08g31040OsAffx.29445.1.S1_at11/118+19031295..19033871expressed protein
LOC_Os08g31060OsAffx.29446.1.S1_at11/118+19040682..19048021Phospholipase D. Active site motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29444.1.S1_at--153--8511Chr08:19021274..19021298 (25 bp)
TGGAACTTCCGGACCCTGCATTGGA
LOC_Os08g31020
OsAffx.29444.1.S1_at--632--4251Chr08:19021266..19021290 (25 bp)
CCGGACCCTGCATTGGATGAAATTT
LOC_Os08g31020
OsAffx.29444.1.S1_at--1000--5592Chr12:2209554..2209573 (20 bp)
GAAATTTGCCTAAGTGTTGGCCGGA
NONE
OsAffx.29444.1.S1_at--723--9134Chr12:2209555..2209579 (25 bp)
TGCCTAAGTGTTGGCCGGAAGTTCC
NONE
OsAffx.29444.1.S1_at--1074--4212Chr08:23682568..23682592 (25 bp)
CCGCGAGCTTCCGAAATCTTGTGGA
NONE
OsAffx.29444.1.S1_at--1132--10113Chr12:2209933..2209952 (20 bp)
TTCCGAAATCTTGTGGATGTCCCGG
NONE
OsAffx.29444.1.S1_at--258--8931Chr08:19020370..19020836 (25 bp)
TGCAAGGAAACGAGGTTTTTCTGTT
LOC_Os08g31020
OsAffx.29444.1.S1_at--622--10651Chr08:19020347..19020371 (25 bp)
TTGCCCGGAAGTTCCGGTGCTAAGA
LOC_Os08g31020
OsAffx.29444.1.S1_at--376--7311Chr08:19020331..19020355 (25 bp)
GTGCTAAGAACACCGGAAGTTCCAG
LOC_Os08g31020
OsAffx.29444.1.S1_at--204--3371Chr08:19020321..19020345 (25 bp)
CACCGGAAGTTCCAGACTGTCTGAG
LOC_Os08g31020
OsAffx.29444.1.S1_at--363--9211Chr08:19020311..19020335 (25 bp)
TCCAGACTGTCTGAGCAGACCGGAA
LOC_Os08g31020
Target Sequence 
TGGAACTTCCGGACCCTGCATTGGATGAAATTTGCCTAAGTGTTGGCCGGAAGTTCCGAGGGTCAGGAACTTCCGGACTT
CCTCCAGTTCAAAAATGTGTCGCCCGCGAGCTTCCGAAATCTTGTGGATGTCCCGGGAAAGTTTGTGAAGGTTTTCCTCA
CCCCTGCAAGGAAACGAGGTTTTTCTGTTGCCCGGAAGTTCCGGTGCTAAGAACACCGGAAGTTCCAGACTGTCTGAGCA
GACCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis