Browse Element(s) Details


Os.56126.1.S1_at

Description gb:AK109300.1
DB_XREF= gi:32994509
TID=Os.56126.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56126 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-D11, full insert sequence.
FL= gb:AK109300.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4248010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42420Os.51715.1.S1_at10/113+23564065..23566177B3 DNA binding domain containing protein, expressed
LOC_Os03g42430Os.55723.1.S1_at11/113+23568249..23570669B3 DNA binding domain containing protein, expressed
LOC_Os03g42440NANA3+23574137..23574521hypothetical protein
LOC_Os03g42450OsAffx.25491.1.S1_at11/113+23575121..23575597expressed protein
LOC_Os03g42464Os.24032.2.S1_at11/113+23577961..23579231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42464Os.7207.1.S1_at8/113+23577961..23579231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42480Os.56126.1.S1_at10/113+23587568..23594348expressed protein
LOC_Os03g42480Os.5139.2.S1_x_at1/113+23587568..23594348expressed protein
LOC_Os03g42480OsAffx.1396.1.S1_x_at1/113+23587568..23594348expressed protein
LOC_Os03g42480Os.5139.2.S1_at1/113+23587568..23594348expressed protein
LOC_Os03g42490NANA3+23596182..23596505hypothetical protein
LOC_Os03g42500NANA3+23598592..23599562hypothetical protein
LOC_Os03g42510OsAffx.32023.1.S1_at9/113+23602186..23605688transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42520Os.51789.1.S1_at11/113+23610229..23611456expressed protein
LOC_Os03g42530OsAffx.32283.1.A1_at9/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.11392.2.S1_x_at6/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.9772.1.S1_at3/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.11392.3.S1_at1/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.27793.1.S1_at1/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.25352.1.S1_at1/113+23612836..23621906retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56126.1.S1_at--462--4811NONE
GCTCTCCCAGGGTAATTAGGCTTGA
NONE
Os.56126.1.S1_at--402--10091Chr03:23587837..23587861 (25 bp)
TAGGCTTGAACAGTGCTGTCCCGAC
LOC_Os03g42480
Os.56126.1.S1_at--394--3891Chr03:23587822..23587846 (25 bp)
CTGTCCCGACTCTGTTAGGATGCAA
LOC_Os03g42480
Os.56126.1.S1_at--825--7971Chr03:23587805..23587829 (25 bp)
GGATGCAATTCTTTTTAGGGTTACA
LOC_Os03g42480
Os.56126.1.S1_at--549--6771Chr03:23587786..23587810 (25 bp)
GTTACAGAAGCTCTCTGGCTCGTTT
LOC_Os03g42480
Os.56126.1.S1_at--1017--4191Chr03:23587758..23587782 (25 bp)
CCCCTGCCTAATGGGAGGTTGTAAG
LOC_Os03g42480
Os.56126.1.S1_at--537--8171Chr03:23587734..23587758 (25 bp)
GGAACTCCCTATTATTACTTCACCT
LOC_Os03g42480
Os.56126.1.S1_at--590--10191Chr03:23587722..23587746 (25 bp)
TATTACTTCACCTGTCACCTAGTGA
LOC_Os03g42480
Os.56126.1.S1_at--636--1691Chr03:23587654..23587678 (25 bp)
ACCAGTTACCCGTTATGTTCATTTG
LOC_Os03g42480
Os.56126.1.S1_at--554--8991Chr03:23587613..23587637 (25 bp)
TGAAGCATCATTCCTTTTCATGGGA
LOC_Os03g42480
Os.56126.1.S1_at--641--7611Chr03:23587592..23587616 (25 bp)
GGGAATGAATGTTCTTGTTTTGCAA
LOC_Os03g42480
Target Sequence 
GCTCTCCCAGGGTAATTAGGCTTGAACAGTGCTGTCCCGACTCTGTTAGGATGCAATTCTTTTTAGGGTTACAGAAGCTC
TCTGGCTCGTTTTTCCCCCTGCCTAATGGGAGGTTGTAAGGAACTCCCTATTATTACTTCACCTGTCACCTAGTGAAAAT
AACAGTCAACATGATTTTTACATTAATAATCCCCTGTTAACCAGTTACCCGTTATGTTCATTTGGTCGTGAAATATTGGA
TGAAGCATCATTCCTTTTCATGGGAATGAATGTTCTTGTTTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis