Browse Element(s) Details


OsAffx.25491.1.S1_at

Description tigr:9631.m04085
TID=OsAffx.25491.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4245011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42410OsAffx.25490.1.S1_at11/113+23549703..23551723B3 DNA binding domain containing protein
LOC_Os03g42420Os.51715.1.S1_at10/113+23564065..23566177B3 DNA binding domain containing protein, expressed
LOC_Os03g42430Os.55723.1.S1_at11/113+23568249..23570669B3 DNA binding domain containing protein, expressed
LOC_Os03g42440NANA3+23574137..23574521hypothetical protein
LOC_Os03g42450OsAffx.25491.1.S1_at11/113+23575121..23575597expressed protein
LOC_Os03g42464Os.24032.2.S1_at11/113+23577961..23579231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42464Os.7207.1.S1_at8/113+23577961..23579231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42480Os.56126.1.S1_at10/113+23587568..23594348expressed protein
LOC_Os03g42480Os.5139.2.S1_x_at1/113+23587568..23594348expressed protein
LOC_Os03g42480OsAffx.1396.1.S1_x_at1/113+23587568..23594348expressed protein
LOC_Os03g42480Os.5139.2.S1_at1/113+23587568..23594348expressed protein
LOC_Os03g42490NANA3+23596182..23596505hypothetical protein
LOC_Os03g42500NANA3+23598592..23599562hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25491.1.S1_at--726--5851Chr03:23575508..23575532 (25 bp)
GACCAAGAGAAAAGTCGTTGCCAAG
LOC_Os03g42450
OsAffx.25491.1.S1_at--926--2311Chr03:23575498..23575522 (25 bp)
AAAGTCGTTGCCAAGAAGCGCTCCT
LOC_Os03g42450
OsAffx.25491.1.S1_at--148--2751Chr03:23575486..23575510 (25 bp)
AAGAAGCGCTCCTCGCAGCGGAGGT
LOC_Os03g42450
OsAffx.25491.1.S1_at--694--1851Chr03:23575420..23575444 (25 bp)
ACGACCGTGAGTGTCCGCACTAGGG
LOC_Os03g42450
OsAffx.25491.1.S1_at--786--2611Chr03:23575290..23575314 (25 bp)
AACCGCCGGAGGCTACCATGCGCGT
LOC_Os03g42450
OsAffx.25491.1.S1_at--730--4851Chr03:23575279..23575303 (25 bp)
GCTACCATGCGCGTTGCGAGGAAAG
LOC_Os03g42450
OsAffx.25491.1.S1_at--1114--9151Chr03:23575272..23575296 (25 bp)
TGCGCGTTGCGAGGAAAGAAACCAA
LOC_Os03g42450
OsAffx.25491.1.S1_at--615--5551Chr03:23575255..23575279 (25 bp)
GAAACCAAGAAGATGCCGCCCGCCG
LOC_Os03g42450
OsAffx.25491.1.S1_at--219--9491Chr03:23575198..23575222 (25 bp)
TCTGCACCGACAGTCTACAGCAAGA
LOC_Os03g42450
OsAffx.25491.1.S1_at--590--5091Chr03:23575195..23575219 (25 bp)
GCACCGACAGTCTACAGCAAGAATG
LOC_Os03g42450
OsAffx.25491.1.S1_at--89--3451Chr03:23575188..23575212 (25 bp)
CAGTCTACAGCAAGAATGCAGCAGC
LOC_Os03g42450
Target Sequence 
GACCAAGAGAAAAGTCGTTGCCAAGAAGCGCTCCTCGCAGCGGAGGTCCTCGCCGATCCCGGCAACATTGGAGAAGATCA
TGACGGGGACGACCGTGAGTGTCCGCACTAGGGTGGGGAAGCTTCGTGGCGGGAGGCAGTTGGTGCTGTGGCTCTCTGCG
GTGGTCGTCTCCGCTGCCGAGGAAGGCTACCTCACCATCCTCTACACGGGCGACTTCCAACCGCCGGAGGCTACCATGCG
CGTTGCGAGGAAAGAAACCAAGAAGATGCCGCCCGCCGCGGCCTCCCCTGCCCTGGCCGACATCGCCTCCTCTGCACCGA
CAGTCTACAGCAAGAATGCAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis