Browse Element(s) Details


Os.24032.2.S1_at

Description gb:AK073006.1
DB_XREF= gi:32983029
TID=Os.24032.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24032 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023147K22, full insert sequence.
FL= gb:AK073006.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4246411/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g2550010/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42420Os.51715.1.S1_at10/113+23564065..23566177B3 DNA binding domain containing protein, expressed
LOC_Os03g42430Os.55723.1.S1_at11/113+23568249..23570669B3 DNA binding domain containing protein, expressed
LOC_Os03g42440NANA3+23574137..23574521hypothetical protein
LOC_Os03g42450OsAffx.25491.1.S1_at11/113+23575121..23575597expressed protein
LOC_Os03g42464Os.24032.2.S1_at11/113+23577961..23579231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42464Os.7207.1.S1_at8/113+23577961..23579231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42480Os.56126.1.S1_at10/113+23587568..23594348expressed protein
LOC_Os03g42480Os.5139.2.S1_x_at1/113+23587568..23594348expressed protein
LOC_Os03g42480OsAffx.1396.1.S1_x_at1/113+23587568..23594348expressed protein
LOC_Os03g42480Os.5139.2.S1_at1/113+23587568..23594348expressed protein
LOC_Os03g42490NANA3+23596182..23596505hypothetical protein
LOC_Os03g42500NANA3+23598592..23599562hypothetical protein
LOC_Os03g42510OsAffx.32023.1.S1_at9/113+23602186..23605688transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24032.2.S1_at--966--114Chr02:31029797..31029821 (25 bp)
ATTCATTTTGTTCTGCCTACTTTAG
NONE
Os.24032.2.S1_at--992--4434Chr02:31029811..31029835 (25 bp)
GCCTACTTTAGGAGATTCATCACAA
NONE
Os.24032.2.S1_at--642--3014Chr02:31029856..31029880 (25 bp)
AATGCACACGTCAAAACTTACAGGG
NONE
Os.24032.2.S1_at--981--7654Chr02:31029880..31029904 (25 bp)
GGGTTGCCGTGTACATGAGATTTTA
NONE
Os.24032.2.S1_at--569--5534Chr02:31029930..31029954 (25 bp)
GAAACTTCCGTATGGAGGTCGACAT
NONE
Os.24032.2.S1_at--276--6154Chr02:31029944..31029968 (25 bp)
GAGGTCGACATTTTTCATGCACTAG
NONE
Os.24032.2.S1_at--1127--11Chr03:23578875..23578899 (25 bp)
ATTGGTTTCAGCATAGTCCAGACAC
LOC_Os03g42464
Os.24032.2.S1_at--675--5193Chr02:31030140..31030164 (25 bp)
GCAATCACAAATCTCACATCTGTCT
NONE
Os.24032.2.S1_at--376--2094Chr02:31030155..31030179 (25 bp)
ACATCTGTCTACATTCGTGCACCAT
NONE
Os.24032.2.S1_at--237--9853Chr02:31030183..31030207 (25 bp)
TACACCCACATCCAATCTTGAGGAA
NONE
Os.24032.2.S1_at--845--4873Chr02:31030345..31030369 (25 bp)
GCTATAGATGGTACTCATATCCCTA
NONE
Target Sequence 
ATTCATTTTGTTCTGCCTACTTTAGGAGATTCATCACAATCATCTTGTATTAGGAGACCAATGCACACGTCAAAACTTAC
AGGGGGTTGCCGTGTACATGAGATTTTAACAGGACATGAAAGATTATGCAAAAGAAACTTCCGTATGGAGGTCGACATTT
TTCATGCACTAGTCAATAAGTTACGTGAGAAAGAGTACCTAACTGGTACTATATGTTTCAGTAGAAGAGCATATTGCTAT
ATTCTTATATACAGTGGCAAAAAATGCAACCAATGAAACACTTCAAGATTGGTTTCAGCATAGTCCAGACACAATACATA
GATATTTCAAAGCAGTGCAGGAAGCAATCACAAATCTCACATCTGTCTACATTCGTGCACCATCCCTACACCCACATCCA
ATCTTGAGGAAACCACAATTTTACCCCTTTTTTCAGAATTGTATTGGTGCTATAGATGGTACTCATATCCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24032.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis