Browse Element(s) Details


Os.55723.1.S1_at

Description gb:AK108660.1
DB_XREF= gi:32993869
TID=Os.55723.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55723 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F01, full insert sequence.
FL= gb:AK108660.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4243011/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42400OsAffx.13307.1.S1_at11/113+23546428..23546879hypothetical protein
LOC_Os03g42410OsAffx.25490.1.S1_at11/113+23549703..23551723B3 DNA binding domain containing protein
LOC_Os03g42420Os.51715.1.S1_at10/113+23564065..23566177B3 DNA binding domain containing protein, expressed
LOC_Os03g42430Os.55723.1.S1_at11/113+23568249..23570669B3 DNA binding domain containing protein, expressed
LOC_Os03g42440NANA3+23574137..23574521hypothetical protein
LOC_Os03g42450OsAffx.25491.1.S1_at11/113+23575121..23575597expressed protein
LOC_Os03g42464Os.24032.2.S1_at11/113+23577961..23579231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42464Os.7207.1.S1_at8/113+23577961..23579231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42480Os.56126.1.S1_at10/113+23587568..23594348expressed protein
LOC_Os03g42480Os.5139.2.S1_x_at1/113+23587568..23594348expressed protein
LOC_Os03g42480OsAffx.1396.1.S1_x_at1/113+23587568..23594348expressed protein
LOC_Os03g42480Os.5139.2.S1_at1/113+23587568..23594348expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0010048biological_processvernalization response
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55723.1.S1_at--779--10631Chr03:23570278..23570302 (25 bp)
TTCGAGCTCACGATGGTGGACGCCG
LOC_Os03g42430
Os.55723.1.S1_at--253--5771Chr03:23570349..23570373 (25 bp)
GACGATGACCGTGCATGTCCTCCGT
LOC_Os03g42430
Os.55723.1.S1_at--7--8611Chr03:23570382..23570406 (25 bp)
TGGTCGCTTCGTGCTTCTGCGCTGA
LOC_Os03g42430
Os.55723.1.S1_at--1109--3771Chr03:23570411..23570435 (25 bp)
CTCGGGCTACCTGCCGTATGTGTTT
LOC_Os03g42430
Os.55723.1.S1_at--281--8771Chr03:23570431..23570455 (25 bp)
TGTTTGGACTTTGGACTCGGGAGCA
LOC_Os03g42430
Os.55723.1.S1_at--746--9431Chr03:23570447..23570471 (25 bp)
TCGGGAGCAGCACACCTGAACTGAT
LOC_Os03g42430
Os.55723.1.S1_at--313--6311Chr03:23570469..23570493 (25 bp)
GATGAACTGAACCAGCTATAACCTG
LOC_Os03g42430
Os.55723.1.S1_at--647--5831Chr03:23570519..23570543 (25 bp)
GACCTGGTGGCAAACAGTGTGTCTA
LOC_Os03g42430
Os.55723.1.S1_at--875--731Chr03:23570571..23570595 (25 bp)
ATGTACCTGGTTGTATCTATACTAG
LOC_Os03g42430
Os.55723.1.S1_at--587--7391Chr03:23570619..23570643 (25 bp)
GTGATGGTCAAGCTTGCACCTCTGT
LOC_Os03g42430
Os.55723.1.S1_at--612--2711Chr03:23570628..23570652 (25 bp)
AAGCTTGCACCTCTGTACTGATGGT
LOC_Os03g42430
Target Sequence 
TTCGAGCTCACGATGGTGGACGCCGCGGCCAGCGGCGGCGGAAACCGCCGGCGACGCTGGAGCCGGCGGCCGACGATGAC
CGTGCATGTCCTCCGTCGGGTGCGTGGTCGCTTCGTGCTTCTGCGCTGACCTCCTCGGGCTACCTGCCGTATGTGTTTGG
ACTTTGGACTCGGGAGCAGCACACCTGAACTGATGAACTGAACCAGCTATAACCTGGTGGCCTCTGCTTTTGCTCTTGCT
GGACCTGGTGGCAAACAGTGTGTCTATACTGGTATGTAATTATGTATGTACGTATGTACCTGGTTGTATCTATACTAGTA
TGTAGTATATGTATGTACCTGGTGATGGTCAAGCTTGCACCTCTGTACTGATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis