Browse Element(s) Details


OsAffx.13307.1.S1_at

Description tigr:9631.m04081
TID=OsAffx.13307.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4240011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42370OsAffx.13305.1.S1_at11/113+23521838..23531538B3 DNA binding domain containing protein
LOC_Os03g42380Os.7388.1.S1_s_at11/113+23536662..23542339expressed protein
LOC_Os03g42380Os.7388.2.S1_x_at9/113+23536662..23542339expressed protein
LOC_Os03g42380Os.7388.2.S1_at9/113+23536662..23542339expressed protein
LOC_Os03g42400OsAffx.13307.1.S1_at11/113+23546428..23546879hypothetical protein
LOC_Os03g42410OsAffx.25490.1.S1_at11/113+23549703..23551723B3 DNA binding domain containing protein
LOC_Os03g42420Os.51715.1.S1_at10/113+23564065..23566177B3 DNA binding domain containing protein, expressed
LOC_Os03g42430Os.55723.1.S1_at11/113+23568249..23570669B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13307.1.S1_at--833--8051Chr03:23546461..23546485 (25 bp)
GGAGACGATGCATATTTCGACTGGA
LOC_Os03g42400
OsAffx.13307.1.S1_at--232--10291Chr03:23546475..23546499 (25 bp)
TTTCGACTGGAACCGTACCAATGGG
LOC_Os03g42400
OsAffx.13307.1.S1_at--125--2891Chr03:23546518..23546542 (25 bp)
AAGGTCATGCTTGGTGATTTCCATG
LOC_Os03g42400
OsAffx.13307.1.S1_at--521--2791Chr03:23546544..23546753 (25 bp)
AAGAGTGGGTCCAATTCCTGGTCTC
LOC_Os03g42400
OsAffx.13307.1.S1_at--1062--3171Chr03:23546740..23546764 (25 bp)
CAATTCCTGGTCTCTCATTGGGCCA
LOC_Os03g42400
OsAffx.13307.1.S1_at--917--31Chr03:23546756..23546780 (25 bp)
ATTGGGCCACGTGGCCTCATGCATT
LOC_Os03g42400
OsAffx.13307.1.S1_at--961--9611Chr03:23546772..23546796 (25 bp)
TCATGCATTGCGCTCTGTTTCAATT
LOC_Os03g42400
OsAffx.13307.1.S1_at--772--4131Chr03:23546782..23546806 (25 bp)
CGCTCTGTTTCAATTCTCAGCTGAA
LOC_Os03g42400
OsAffx.13307.1.S1_at--994--9471Chr03:23546796..23546820 (25 bp)
TCTCAGCTGAAAAACATGCCACGTA
LOC_Os03g42400
OsAffx.13307.1.S1_at--1073--2411Chr03:23546806..23546830 (25 bp)
AAAACATGCCACGTATTCGCACCAT
LOC_Os03g42400
OsAffx.13307.1.S1_at--601--9351Chr03:23546822..23546846 (25 bp)
TCGCACCATCTCACAGCCGTTAGAT
LOC_Os03g42400
Target Sequence 
GGAGACGATGCATATTTCGACTGGAACCGTACCAATGGGGAAGACAAACATTTCTTCAAGGTCATGCTTGGTGATTTCCA
TGAAAGAGTGGGTCCAATTCCTGGTCTCTCATTGGGCCACGTGGCCTCATGCATTGCGCTCTGTTTCAATTCTCAGCTGA
AAAACATGCCACGTATTCGCACCATCTCACAGCCGTTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis