Browse Element(s) Details


OsAffx.13305.1.S1_at

Description tigr:9631.m04078
TID=OsAffx.13305.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative auxin response factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4237011/11B3 DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42310NANA3+23495309..23497239hypothetical protein
LOC_Os03g42320Os.26567.1.S1_at11/113+23499613..23501941SEC1-family transport protein SLY1, putative, expressed
LOC_Os03g42334NANA3+23509659..23510195hypothetical protein
LOC_Os03g42350Os.37674.1.S1_s_at11/113+23510478..23517135TPR Domain containing protein, expressed
LOC_Os03g42350OsAffx.13304.1.S1_at10/113+23510478..23517135TPR Domain containing protein, expressed
LOC_Os03g42360OsAffx.3487.1.S1_at11/113+23520278..23520748hypothetical protein
LOC_Os03g42370OsAffx.13305.1.S1_at11/113+23521838..23531538B3 DNA binding domain containing protein
LOC_Os03g42380Os.7388.1.S1_s_at11/113+23536662..23542339expressed protein
LOC_Os03g42380Os.7388.2.S1_x_at9/113+23536662..23542339expressed protein
LOC_Os03g42380Os.7388.2.S1_at9/113+23536662..23542339expressed protein
LOC_Os03g42400OsAffx.13307.1.S1_at11/113+23546428..23546879hypothetical protein
LOC_Os03g42410OsAffx.25490.1.S1_at11/113+23549703..23551723B3 DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13305.1.S1_at--1104--8631Chr03:23530616..23530640 (25 bp)
TGGGAAGAACCCCTGCACATTTCAA
LOC_Os03g42370
OsAffx.13305.1.S1_at--1137--1471Chr03:23530640..23530664 (25 bp)
AGCAATTCGCATGATCTTCCTGTGA
LOC_Os03g42370
OsAffx.13305.1.S1_at--689--431Chr03:23530904..23530928 (25 bp)
ATCTCCAAGGGCATCCGGTTCTGAA
LOC_Os03g42370
OsAffx.13305.1.S1_at--574--7891Chr03:23530920..23530944 (25 bp)
GGTTCTGAATTGCATCCTCCCAAAG
LOC_Os03g42370
OsAffx.13305.1.S1_at--258--2171Chr03:23530946..23530970 (25 bp)
ACACCCGCCTTACAGATATGCAGAA
LOC_Os03g42370
OsAffx.13305.1.S1_at--812--5131Chr03:23530985..23531009 (25 bp)
GCAAAGTTGGAGCTATTCATTCTGA
LOC_Os03g42370
OsAffx.13305.1.S1_at--264--4171Chr03:23531014..23531038 (25 bp)
CCCATCTATGGGTGCATCCTTAGGA
LOC_Os03g42370
OsAffx.13305.1.S1_at--657--6091Chr03:23531040..23531064 (25 bp)
GAGTCGCGTCCACGGAAAATCTCAA
LOC_Os03g42370
OsAffx.13305.1.S1_at--979--1811Chr03:23531350..23531374 (25 bp)
ACGCTTCAACGTCATGGCAAAAATT
LOC_Os03g42370
OsAffx.13305.1.S1_at--1066--2431Chr03:23531410..23531434 (25 bp)
AAAAGGCTCTCGACAGGGTGGAGTC
LOC_Os03g42370
OsAffx.13305.1.S1_at--500--471Chr03:23531470..23531494 (25 bp)
ATCTGCCTCTTTGAGCTACTGAAGA
LOC_Os03g42370
Target Sequence 
TGGGAAGAACCCCTGCACATTTCAAGCAATTCGCATGATCTTCCTGTGAAATCACCACAAAATGTAAGCAAATCTGAGAA
ACAATGGGATAGCTCAGAACAAGAAAACGACACCGCGAATATCGAAGAAGTTGCATTGCAAGGAGATGATCTCCAAGGGC
ATCCGGTTCTGAATTGCATCCTCCCAAAGCACACCCGCCTTACAGATATGCAGAAGCAGCAGCTGGAAAGCAAAGTTGGA
GCTATTCATTCTGAAATCCCCATCTATGGGTGCATCCTTAGGAAGAGTCGCGTCCACGGAAAATCTCAAACCGTAGACAT
ATGTCGAGAATATGCAGATGTATATCTTCCATTCAAGGAGTTAAACATGACGCTTCAACGTCATGGCAAAAATTGGGAGG
TGCTATGTCGCACTAAGGATACAAGAACCAAAAGGCTCTCGACAGGGTGGAGTCGGTTTGCACAGGAAAACAATTTGCAG
GTGGGAGATATCTGCCTCTTTGAGCTACTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis