Browse Element(s) Details


Os.5139.2.S1_x_at

Description gb:AK061062.1
DB_XREF= gi:32971080
TID=Os.5139.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-159-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-A06, full insert sequence.
FL= gb:AK061062.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g477202/11TPR Domain containing protein
LOC_Os08g372302/11hypothetical protein
LOC_Os03g424801/11expressed protein
LOC_Os04g039101/11hypothetical protein
LOC_Os01g582801/11Subtilisin N-terminal Region family protein, expressed
LOC_Os01g138401/11hypothetical protein
LOC_Os07g362201/11hypothetical protein
LOC_Os04g084701/11F-box domain containing protein
LOC_Os01g191801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47686OsAffx.22673.2.S1_x_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.2.S1_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.1.S1_at9/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.2557.1.S1_x_at2/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.10442.1.S1_s_at2/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47702OsAffx.1626.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.28851.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.2.S1_at4/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.1.S1_s_at2/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.20341.2.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22674.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.24556.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22673.2.S1_x_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.9154.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47720OsAffx.22674.1.S1_at11/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47720Os.5139.2.S1_x_at2/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47720Os.5139.2.S1_at1/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47730OsAffx.13395.1.S1_x_at11/113+27000580..27002608Associated with HOX family protein
LOC_Os03g47740Os.7976.1.S1_a_at11/113+27006206..27012857Associated with HOX family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006950biological_processresponse to stress
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5139.2.S1_x_at--829--8551Chr07:28653818..28653842 (25 bp)
TGGATGTGGCGCGTCTTCTGCACAC
NONE
Os.5139.2.S1_x_at--483--8471Chr07:28653824..28653848 (25 bp)
TGGCGCGTCTTCTGCACACGAAGGC
NONE
Os.5139.2.S1_x_at--407--10591Chr07:28653833..28653857 (25 bp)
TTCTGCACACGAAGGCTGGCTGACG
NONE
Os.5139.2.S1_x_at--346--8471Chr07:28653849..28653873 (25 bp)
TGGCTGACGGGAGACGCCGGTTCAG
NONE
Os.5139.2.S1_x_at--168--4491Chr07:28653864..28653888 (25 bp)
GCCGGTTCAGGGGTCTAACATGTCG
NONE
Os.5139.2.S1_x_at--62--6091Chr07:28653909..28653933 (25 bp)
GAGTATCAGTGCGTTAGTCGTGGAT
NONE
Os.5139.2.S1_x_at--219--10451Chr07:28653922..28653946 (25 bp)
TTAGTCGTGGATTCGCTTGTGGTGA
NONE
Os.5139.2.S1_x_at--171--73936Chr12:21811602..21811689 (25 bp)
GTGAGCGGCGGGTCGTGCTGTCTCA
NONE
Os.5139.2.S1_x_at--687--7735Chr09:730170..730194 (25 bp)
GGTGTTTGCCGGGTGAAAGCCTAGT
NONE
Os.5139.2.S1_x_at--901--10418Chr11:16776849..16776874 (25 bp)
TTACGACCCTCCAGGTTATAATCTT
NONE
Os.5139.2.S1_x_at--870--58112Chr11:14365717..14365741 (24 bp)
GACCCTCCAGGTTATAATCTTGTAA
NONE
Target Sequence 
TGGATGTGGCGCGTCTTCTGCACACGAAGGCTGGCTGACGGGAGACGCCGGTTCAGGGGTCTAACATGTCGGCAGAGCTT
GTGTGGTGGTGGAGTATCAGTGCGTTAGTCGTGGATTCGCTTGTGGTGAGCGGCGGGTCGTGCTGTCTCACCCCTCAAGG
GTGTTTGCCGGGTGAAAGCCTAGTCTTGGCTCCTTTGAGTCCCGACGGACGGCGGCGGCGGTTTTTCCGTCGCTTCTCTT
CTTGAAGACGTCGTTCTGGCATCCCCTAGGGGGCGATCTCGTCTGTGTCCCTTTGTTGGTCTAGTGGCGGTCGGTCACGC
TTAGCGGCGGTCGATCCGGTGCTAGACTTCTCCTGGGTTTGTGTGTTGGCGATGTCGGTGTGTGGGTGGTGTTTTTTTTT
TCCTTTTTCCTGGTTACGACCCTCCAGGTTATAATCTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5139.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis