Browse Element(s) Details


OsAffx.10442.2.S1_at

Description tigr:9631.m04638
TID=OsAffx.10442.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative protein phosphatase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g476709/11TPR Domain containing protein
LOC_Os03g477024/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47640Os.50633.1.S1_at10/113+26927777..26935249hypothetical protein
LOC_Os03g47640Os.45041.1.S1_x_at5/113+26927777..26935249hypothetical protein
LOC_Os03g47650OsAffx.22672.1.S1_at10/113+26937495..26944710TPR Domain containing protein, expressed
LOC_Os03g47670OsAffx.10442.1.S1_s_at10/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.10442.1.S1_at9/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.10442.2.S1_at9/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.1626.1.S1_at2/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.2.S1_x_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.2.S1_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.1.S1_at9/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.2557.1.S1_x_at2/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.10442.1.S1_s_at2/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47702OsAffx.1626.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.28851.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.2.S1_at4/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.1.S1_s_at2/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.20341.2.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22674.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.24556.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22673.2.S1_x_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.9154.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10442.2.S1_at--951--10731Chr03:26952098..26952247 (25 bp)
TTGATTCCCAAGTTCCAAATTCTGA
LOC_Os03g47670
OsAffx.10442.2.S1_at--64--2391Chr03:26952253..26952277 (25 bp)
AAACGGTCACTTGATAGCTCTGGTC
LOC_Os03g47670
OsAffx.10442.2.S1_at--834--6471Chr03:26952265..26952289 (25 bp)
GATAGCTCTGGTCATGATCATTTGA
LOC_Os03g47670
OsAffx.10442.2.S1_at--16--7831Chr03:26952274..26952298 (25 bp)
GGTCATGATCATTTGAATCCCCATT
LOC_Os03g47670
OsAffx.10442.2.S1_at--911--10731NONE
TTGAATCCCCATTATTTCTTGCAGG
NONE
OsAffx.10442.2.S1_at--765--10411NONE
TTATTTCTTGCAGGGTGAGTCATGT
NONE
OsAffx.10442.2.S1_at--1149--1531Chr03:26954228..26954252 (25 bp)
AGCATTCGAGGCATTCTTGAACGCG
LOC_Os03g47670
OsAffx.10442.2.S1_at--197--6212Chr03:26991752..26991776 (25 bp)
GAGGCATTCTTGAACGCGCTGAAAC
LOC_Os03g47702
OsAffx.10442.2.S1_at--218--10752Chr03:26991761..26991785 (25 bp)
TTGAACGCGCTGAAACTGGATCCTG
LOC_Os03g47702
OsAffx.10442.2.S1_at--900--2552Chr03:26991774..26991798 (25 bp)
AACTGGATCCTGCTAATGCCGAGAT
LOC_Os03g47702
OsAffx.10442.2.S1_at--1003--6352Chr03:26991779..26991803 (25 bp)
GATCCTGCTAATGCCGAGATTGAGA
LOC_Os03g47702
Target Sequence 
TTGATTCCCAAGTTCCAAATTCTGAAGATAAAACGGTCACTTGATAGCTCTGGTCATGATCATTTGAATCCCCATTATTT
CTTGCAGGGTGAGTCATGTAGCAAGGTCAGTGACAGAAAGGCTGAGCTAAAATCACAGGGAGAAAAAGCCGTTAAGAGAA
AGGACTACCTTGCTGCATCAAAGATCTACACTAAGGCGCTTGAGCTAGACTATTTTGATGCAACCCTGTATTCAAACAGA
AGCCTTTGTTACCTACAAATTGGAAAAGCACAAAAGGCTTTGCTTGACGCAAAAAAATGTGTAAAACTGCGGCCTAAGTG
GATGAAAGGTCACTACCGGGAAGGAGCTGCTTTGATGTTGCTAAAGGAGCACAAGAAAGCATTCGAGGCATTCTTGAACG
CGCTGAAACTGGATCCTGCTAATGCCGAGATTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10442.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis