Browse Element(s) Details


OsAffx.22674.1.S1_at

Description gb:NM_184875.1
DB_XREF= gi:34896839
GEN=OSJNBa0003G23.7
TID=OsAffx.22674.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative stress-inducible protein (OSJNBa0003G23.7), mRNA.
PROD=putative stress-inducible protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4772011/11TPR Domain containing protein
LOC_Os03g477021/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47686OsAffx.22673.2.S1_x_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.2.S1_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.1.S1_at9/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.2557.1.S1_x_at2/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.10442.1.S1_s_at2/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47702OsAffx.1626.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.28851.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.2.S1_at4/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.1.S1_s_at2/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.20341.2.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22674.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.24556.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22673.2.S1_x_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.9154.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47720OsAffx.22674.1.S1_at11/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47720Os.5139.2.S1_x_at2/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47720Os.5139.2.S1_at1/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47730OsAffx.13395.1.S1_x_at11/113+27000580..27002608Associated with HOX family protein
LOC_Os03g47740Os.7976.1.S1_a_at11/113+27006206..27012857Associated with HOX family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22674.1.S1_at--1099--7991Chr03:26996712..26996736 (25 bp)
GGATGTGGAATTACTGTTTCCCTTA
LOC_Os03g47720
OsAffx.22674.1.S1_at--1135--111Chr03:26996779..26996803 (25 bp)
ATTCTTGCCCATGCCAAATCAAAGC
LOC_Os03g47720
OsAffx.22674.1.S1_at--558--4831Chr03:26997786..26997810 (25 bp)
GCTCAGCTCAAACTACAGGGTGAGA
LOC_Os03g47720
OsAffx.22674.1.S1_at--732--5571Chr03:26997823..26997847 (25 bp)
GAAAGGACTACCATGGCGCCTCAAT
LOC_Os03g47720
OsAffx.22674.1.S1_at--262--871Chr03:26997835..26997859 (25 bp)
ATGGCGCCTCAATTTTCTACACTGA
LOC_Os03g47720
OsAffx.22674.1.S1_at--732--2252Chr03:26998704..26998728 (25 bp)
AAATGACCGAAGCTTTGTTTGATGC
LOC_Os03g47720
OsAffx.22674.1.S1_at--257--171Chr03:26998731..26998755 (25 bp)
ATTATTGCATAAAATCGCGGCCTGA
LOC_Os03g47720
OsAffx.22674.1.S1_at--171--9831Chr03:26998740..26998764 (25 bp)
TAAAATCGCGGCCTGAATGGTTAAA
LOC_Os03g47720
OsAffx.22674.1.S1_at--330--2311Chr03:26998900..26998924 (25 bp)
AAAGGCATGTGACGCATTCTTGGCT
LOC_Os03g47720
OsAffx.22674.1.S1_at--940--7371Chr03:26998908..26998932 (25 bp)
GTGACGCATTCTTGGCTGGACTGAA
LOC_Os03g47720
OsAffx.22674.1.S1_at--1133--2811Chr03:26998931..26998955 (25 bp)
AAGTTGGATCCTTTGAATGCTGAGA
LOC_Os03g47720
Target Sequence 
GGATGTGGAATTACTGTTTCCCTTAACTTCCCCCATTCGAGCTGTGTCAAACTGGACTGTTGAAGGAATTCTTGCCCATG
CCAAATCAAAGCATGCCAGATCAAAATGTTCAAAGCCCAAGGACAAGCAGGATGATCATAATAAAAAGGCTCAGTTCAAA
CTACGTGGTGAGAAAGCTATTAAGGACAAGCATGATGAGCAGGATAAAAAGGCTCAGCTCAAACTACAGGGTGAGAAAGC
TGTTAAGAGAAAGGACTACCATGGCGCCTCAATTTTCTACACTGAGGNANNNNNNCTGGATCCTACTGATGCAACATTGT
ATTCCAATAGGAGCCTTTGCCATCTTCAAATGACCGAAGCTTTGTTTGATGCTGATTATTGCATAAAATCGCGGCCTGAA
TGGTTAAAAGGTTACTACAGGAAAGGGGCTGCTCTCATGTTGCTGAAGGAGTATGAAAAGGCATGTGACGCATTCTTGGC
TGGACTGAAGTTGGATCCTTTGAATGCTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis