Browse Element(s) Details


OsAffx.2557.1.S1_x_at

Description tigr:9630.m00885
TID=OsAffx.2557.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0969010/11expressed protein
LOC_Os03g476862/11TPR Domain containing protein
LOC_Os07g495101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09630Os.5025.1.S1_at11/112+4949549..4952480Nitrate-induced NOI protein, expressed
LOC_Os02g09640OsAffx.24175.1.S1_at11/112+4954135..4955518hypothetical protein
LOC_Os02g09650NANA2+4958924..4959614AP2 domain containing protein, expressed
LOC_Os02g09660OsAffx.2554.1.S1_at11/112+4965201..4965467expressed protein
LOC_Os02g09670Os.50301.1.S1_at11/112+4966917..4973612expressed protein
LOC_Os02g09670Os.57116.1.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09670OsAffx.26564.3.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09690Os.51368.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690Os.51722.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_x_at10/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_at10/112+4974451..4984577expressed protein
LOC_Os02g09710OsAffx.24176.1.S1_at10/112+4985040..4985860hypothetical protein
LOC_Os02g09720OsAffx.11961.1.S1_at3/112+4989053..4997675ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2557.1.S1_x_at--198--1731NONE
ACCTCAAGTTCAATGGGCCAGGGTC
NONE
OsAffx.2557.1.S1_x_at--348--3731Chr02:4975140..4975160 (21 bp)
CTCAAGTTCAATGGGCCAGGGTCAA
LOC_Os02g09690
OsAffx.2557.1.S1_x_at--869--2952Chr03:26960967..26960988 (22 bp)
AATGGGCCAGGGTCAACAAGCATCG
LOC_Os03g47686
OsAffx.2557.1.S1_x_at--80--4353Chr07:29653200..29653221 (22 bp)
CCAGGGTCAACAAGCATCGGCTAAT
LOC_Os07g49510
OsAffx.2557.1.S1_x_at--1148--3231Chr02:4975161..4975185 (25 bp)
CAAGCATCGGCTAATGGGGTCACTG
LOC_Os02g09690
OsAffx.2557.1.S1_x_at--806--7691Chr02:4975177..4975201 (25 bp)
GGGTCACTGCTTGCAATATACGAAG
LOC_Os02g09690
OsAffx.2557.1.S1_x_at--598--9691Chr02:4975180..4975204 (25 bp)
TCACTGCTTGCAATATACGAAGGAA
LOC_Os02g09690
OsAffx.2557.1.S1_x_at--856--3831Chr02:4975183..4975207 (25 bp)
CTGCTTGCAATATACGAAGGAACAT
LOC_Os02g09690
OsAffx.2557.1.S1_x_at--189--3191Chr02:4975190..4975214 (25 bp)
CAATATACGAAGGAACATACTGGTT
LOC_Os02g09690
OsAffx.2557.1.S1_x_at--192--9871Chr02:4975195..4975362 (25 bp)
TACGAAGGAACATACTGGTTAGGAA
LOC_Os02g09690
OsAffx.2557.1.S1_x_at--8--8151Chr02:4975201..4975368 (25 bp)
GGAACATACTGGTTAGGAAGAATTC
LOC_Os02g09690
Target Sequence 
ACCTCAAGTTCAATGGGCCAGGGTCAACAAGCATCGGCTAATGGGGTCACTGCTTGCAATATACGAAGGAACATACTGGT
TAGGAAGAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2557.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis