Browse Element(s) Details


OsAffx.24175.1.S1_at

Description tigr:9630.m00880
TID=OsAffx.24175.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0964011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09580OsAffx.2553.1.S1_at11/112+4931298..4935969F-box domain containing protein
LOC_Os02g09590Os.6830.1.S1_at10/112+4936445..4937796ribosomal protein S21 containing protein, expressed
LOC_Os02g09600Os.4883.1.S1_at10/112+4938727..4942072expressed protein
LOC_Os02g09610Os.55688.1.S1_at11/112+4942759..4944252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g09620Os.51107.1.S1_at11/112+4944685..4948383GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os02g09630Os.5025.1.S1_at11/112+4949549..4952480Nitrate-induced NOI protein, expressed
LOC_Os02g09640OsAffx.24175.1.S1_at11/112+4954135..4955518hypothetical protein
LOC_Os02g09650NANA2+4958924..4959614AP2 domain containing protein, expressed
LOC_Os02g09660OsAffx.2554.1.S1_at11/112+4965201..4965467expressed protein
LOC_Os02g09670Os.50301.1.S1_at11/112+4966917..4973612expressed protein
LOC_Os02g09670Os.57116.1.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09670OsAffx.26564.3.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09690Os.51368.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690Os.51722.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_x_at10/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_at10/112+4974451..4984577expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24175.1.S1_at--1116--10031Chr02:4954963..4954987 (25 bp)
TAGTTCCAACAGACCCGGCCACTGA
LOC_Os02g09640
OsAffx.24175.1.S1_at--687--8951Chr02:4954941..4954965 (25 bp)
TGACTACCCACTTGTTTATCCAGTA
LOC_Os02g09640
OsAffx.24175.1.S1_at--311--3011Chr02:4954875..4954898 (24 bp)
AATGACCTATTTGGCTATTTCCCTC
LOC_Os02g09640
OsAffx.24175.1.S1_at--805--9111Chr02:4954295..4954319 (25 bp)
TGCTGCTCCAGATCTTGCGCGTCAC
LOC_Os02g09640
OsAffx.24175.1.S1_at--961--1831Chr02:4954255..4954279 (25 bp)
ACGCAGGAGCAAAGCTTCCCATGTG
LOC_Os02g09640
OsAffx.24175.1.S1_at--348--2351Chr02:4954245..4954269 (25 bp)
AAAGCTTCCCATGTGCCTGATGTCG
LOC_Os02g09640
OsAffx.24175.1.S1_at--611--771Chr02:4954226..4954250 (25 bp)
ATGTCGCGCCGGTGGTGTGCAATTC
LOC_Os02g09640
OsAffx.24175.1.S1_at--289--8611Chr02:4954214..4954238 (25 bp)
TGGTGTGCAATTCCGGCGACAACGA
LOC_Os02g09640
OsAffx.24175.1.S1_at--1074--5731Chr02:4954191..4954215 (25 bp)
GACGGCGACGGCTATAATAATCGAT
LOC_Os02g09640
OsAffx.24175.1.S1_at--370--3071Chr02:4954176..4954200 (25 bp)
AATAATCGATCATGGGCGCTCGTAA
LOC_Os02g09640
OsAffx.24175.1.S1_at--187--791Chr02:4954165..4954189 (25 bp)
ATGGGCGCTCGTAATGAAGCTTCTT
LOC_Os02g09640
Target Sequence 
TAGTTCCAACAGACCCGGCCACTGACTACCCACTTGTTTATCCAGTAGTAAAATGCAACATGAGCAGATTATGGGGTAAC
AAGTATGGTAATGACCTATTTGGCTATTTCCCTCTGCTGCTCCAGATCTTGCGCGTCACTGCCTGCTCACCAGCACGCAG
GAGCAAAGCTTCCCATGTGCCTGATGTCGCGCCGGTGGTGTGCAATTCCGGCGACAACGACGGCGACGGCTATAATAATC
GATCATGGGCGCTCGTAATGAAGCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis