Browse Element(s) Details


Os.55688.1.S1_at

Description gb:AK108567.1
DB_XREF= gi:32993776
TID=Os.55688.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-C12, full insert sequence.
FL= gb:AK108567.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0961011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g060801/11hypothetical protein
LOC_Os05g045841/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09550NANA2+4915505..4921468retrotransposon protein, putative, unclassified
LOC_Os02g09560Os.28943.1.S1_x_at2/112+4922092..4925025retrotransposon protein, putative, unclassified
LOC_Os02g09569Os.21387.3.S1_x_at1/112+4926922..4928035hypothetical protein
LOC_Os02g09569Os.21387.3.S1_at1/112+4926922..4928035hypothetical protein
LOC_Os02g09580OsAffx.2553.1.S1_at11/112+4931298..4935969F-box domain containing protein
LOC_Os02g09590Os.6830.1.S1_at10/112+4936445..4937796ribosomal protein S21 containing protein, expressed
LOC_Os02g09600Os.4883.1.S1_at10/112+4938727..4942072expressed protein
LOC_Os02g09610Os.55688.1.S1_at11/112+4942759..4944252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g09620Os.51107.1.S1_at11/112+4944685..4948383GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os02g09630Os.5025.1.S1_at11/112+4949549..4952480Nitrate-induced NOI protein, expressed
LOC_Os02g09640OsAffx.24175.1.S1_at11/112+4954135..4955518hypothetical protein
LOC_Os02g09650NANA2+4958924..4959614AP2 domain containing protein, expressed
LOC_Os02g09660OsAffx.2554.1.S1_at11/112+4965201..4965467expressed protein
LOC_Os02g09670Os.50301.1.S1_at11/112+4966917..4973612expressed protein
LOC_Os02g09670Os.57116.1.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09670OsAffx.26564.3.S1_at10/112+4966917..4973612expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55688.1.S1_at--123--8951Chr02:4943858..4943882 (25 bp)
TGACGTGCACCGACGCGAGCAAGTT
LOC_Os02g09610
Os.55688.1.S1_at--54--7151Chr02:4943962..4943986 (25 bp)
GTCTTCCTATGAACGCAACCATGTG
LOC_Os02g09610
Os.55688.1.S1_at--565--5451Chr02:4943972..4943996 (25 bp)
GAACGCAACCATGTGTTTATAGGAG
LOC_Os02g09610
Os.55688.1.S1_at--587--7473Chr02:4944024..4944048 (25 bp)
GTGTGATTTCAACCCTAAAGTCTCA
LOC_Os02g09610
Os.55688.1.S1_at--1016--2592Chr02:4944034..4944058 (25 bp)
AACCCTAAAGTCTCATGTTCAATTT
LOC_Os02g09610
Os.55688.1.S1_at--837--10332Chr02:4944092..4944116 (25 bp)
TTTAGAGGGATGTCTCTCCCTTCAA
LOC_Os02g09610
Os.55688.1.S1_at--332--774Chr07:27194425..27194445 (21 bp)
ATGTCTCTCCCTTCAAATCTTGTTT
NONE
Os.55688.1.S1_at--265--3291Chr02:4944114..4944138 (25 bp)
CAAATCTTGTTTGTTTTTAGCGCAC
LOC_Os02g09610
Os.55688.1.S1_at--440--6811Chr02:4944126..4944150 (25 bp)
GTTTTTAGCGCACAAGCAAGATTCT
LOC_Os02g09610
Os.55688.1.S1_at--1119--6551Chr02:4944145..4944169 (25 bp)
GATTCTGCGTGCTGTGAACTACTAT
LOC_Os02g09610
Os.55688.1.S1_at--868--1191Chr02:4944176..4944200 (25 bp)
AGTATACCCATTGAACACGATGATG
LOC_Os02g09610
Target Sequence 
TGACGTGCACCGACGCGAGCAAGTTCGCGTTCTGGGACGCCATCCACCCCACGGAACGCCTCCACCGCGCCATCGCCGAC
GCCAAGATGAACACCACCCTCCACGTCTTCCTATGAACGCAACCATGTGTTTATAGGAGATGTACTTGATAGTTCAGTGA
TAAGGGGTGTGATTTCAACCCTAAAGTCTCATGTTCAATTTTTAATATGTTCATGATTTCTTCTTAAAAAAATATTTAGA
GGGATGTCTCTCCCTTCAAATCTTGTTTGTTTTTAGCGCACAAGCAAGATTCTGCGTGCTGTGAACTACTATTCAACAAG
TATACCCATTGAACACGATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis