Browse Element(s) Details


OsAffx.2553.1.S1_at

Description tigr:9630.m00874
TID=OsAffx.2553.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0958011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09520OsAffx.11957.1.S1_at11/112+4906979..4907296hypothetical protein
LOC_Os02g09520OsAffx.11957.1.S1_x_at11/112+4906979..4907296hypothetical protein
LOC_Os02g09530Os.54110.1.S1_at11/112+4908955..4911331expressed protein
LOC_Os02g09540OsAffx.11958.1.S1_s_at11/112+4913033..4913439expressed protein
LOC_Os02g09550NANA2+4915505..4921468retrotransposon protein, putative, unclassified
LOC_Os02g09560Os.28943.1.S1_x_at2/112+4922092..4925025retrotransposon protein, putative, unclassified
LOC_Os02g09569Os.21387.3.S1_x_at1/112+4926922..4928035hypothetical protein
LOC_Os02g09569Os.21387.3.S1_at1/112+4926922..4928035hypothetical protein
LOC_Os02g09580OsAffx.2553.1.S1_at11/112+4931298..4935969F-box domain containing protein
LOC_Os02g09590Os.6830.1.S1_at10/112+4936445..4937796ribosomal protein S21 containing protein, expressed
LOC_Os02g09600Os.4883.1.S1_at10/112+4938727..4942072expressed protein
LOC_Os02g09610Os.55688.1.S1_at11/112+4942759..4944252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g09620Os.51107.1.S1_at11/112+4944685..4948383GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os02g09630Os.5025.1.S1_at11/112+4949549..4952480Nitrate-induced NOI protein, expressed
LOC_Os02g09640OsAffx.24175.1.S1_at11/112+4954135..4955518hypothetical protein
LOC_Os02g09650NANA2+4958924..4959614AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2553.1.S1_at--558--971Chr02:4933466..4933490 (25 bp)
AGGAGAGCTGCATTTCTGCGCCGAA
LOC_Os02g09580
OsAffx.2553.1.S1_at--302--4151Chr02:4933484..4933508 (25 bp)
CGCCGAATCTGACATCTCTGATCAT
LOC_Os02g09580
OsAffx.2553.1.S1_at--427--6851Chr02:4933578..4933602 (25 bp)
GTTTCCTCTCATCGAATTTTGTGCT
LOC_Os02g09580
OsAffx.2553.1.S1_at--650--10231Chr02:4933595..4933619 (25 bp)
TTTGTGCTTATGACATGCGCCAGTT
LOC_Os02g09580
OsAffx.2553.1.S1_at--1101--3111Chr02:4933645..4933669 (25 bp)
AATTTGGACCTCGATTACTATGCGT
LOC_Os02g09580
OsAffx.2553.1.S1_at--1061--2211Chr02:4935485..4935509 (25 bp)
ACAATCCTCAGTTATGCCCGAAATT
LOC_Os02g09580
OsAffx.2553.1.S1_at--125--7231Chr02:4935520..4935544 (25 bp)
GTCGACCTGACTCTCGGACAATGGT
LOC_Os02g09580
OsAffx.2553.1.S1_at--929--151Chr02:4935571..4935595 (25 bp)
ATTATTTTCCTTCAGAGCTCACCAA
LOC_Os02g09580
OsAffx.2553.1.S1_at--961--5511Chr02:4935734..4935754 (21 bp)
GAAAAGTATTATCCGCATCCATATG
LOC_Os02g09580
OsAffx.2553.1.S1_at--884--8971Chr02:4935840..4935864 (25 bp)
TGAACCCCTGGCCAAGATCGTGGAA
LOC_Os02g09580
OsAffx.2553.1.S1_at--895--11Chr02:4935914..4935938 (25 bp)
ATTGGAGTCAGATCCCGTTTCAGTT
LOC_Os02g09580
Target Sequence 
AGGAGAGCTGCATTTCTGCGCCGAATCTGACATCTCTGATCATGCATCAGCCTGAGAACTTCGTGCCCGTACTGGACGAC
GTCGCGTCGCTGGTGACGGCAACAGTTGACCTGTTTCCTCTCATCGAATTTTGTGCTTATGACATGCGCCAGTTGCTCTG
GAGCCTTTCTGGTGTTAGAAATTTGGACCTCGATTACTATGCGTGTAAGATGACAATAAAAAACAATCCTCAGTTATGCC
CGAAATTTATCAATCTTGTCGACCTGACTCTCGGACAATGGTGTCTAGATTCAGACTTCTACGTGTTGATTATTTTCCTT
CAGAGCTCACCAAAACTGGAAAAGCTTACTCTGAAACTCGAAAAGTATTATCCGCATCCATATGAACATATCATTGGTGA
TGAGCTTACAGAAAGATCGTTTACATGTGAGCATCTTAAGATTGTTGAGATCATATGCATGGAGGATGATGAACCCCTGG
CCAAGATCGTGGAAGGCTTGTTTGTTGACAATGGCATGAACTCTGTTCGGTTTGATATCAAATATTGGAGTCAGATCCCG
TTTCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis