Browse Element(s) Details


Os.5025.1.S1_at

Description gb:AK108100.1
DB_XREF= gi:32993309
TID=Os.5025.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-A12, full insert sequence.
FL= gb:AK108100.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0963011/11Nitrate-induced NOI protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09560Os.28943.1.S1_x_at2/112+4922092..4925025retrotransposon protein, putative, unclassified
LOC_Os02g09569Os.21387.3.S1_x_at1/112+4926922..4928035hypothetical protein
LOC_Os02g09569Os.21387.3.S1_at1/112+4926922..4928035hypothetical protein
LOC_Os02g09580OsAffx.2553.1.S1_at11/112+4931298..4935969F-box domain containing protein
LOC_Os02g09590Os.6830.1.S1_at10/112+4936445..4937796ribosomal protein S21 containing protein, expressed
LOC_Os02g09600Os.4883.1.S1_at10/112+4938727..4942072expressed protein
LOC_Os02g09610Os.55688.1.S1_at11/112+4942759..4944252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g09620Os.51107.1.S1_at11/112+4944685..4948383GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os02g09630Os.5025.1.S1_at11/112+4949549..4952480Nitrate-induced NOI protein, expressed
LOC_Os02g09640OsAffx.24175.1.S1_at11/112+4954135..4955518hypothetical protein
LOC_Os02g09650NANA2+4958924..4959614AP2 domain containing protein, expressed
LOC_Os02g09660OsAffx.2554.1.S1_at11/112+4965201..4965467expressed protein
LOC_Os02g09670Os.50301.1.S1_at11/112+4966917..4973612expressed protein
LOC_Os02g09670Os.57116.1.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09670OsAffx.26564.3.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09690Os.51368.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690Os.51722.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_x_at10/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_at10/112+4974451..4984577expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5025.1.S1_at--539--2351Chr02:4949963..4949987 (25 bp)
AAAGCCGAGAAGAGGTCCTTCTTAT
LOC_Os02g09630
Os.5025.1.S1_at--734--6111Chr02:4949957..4949976 (20 bp)
GAGGTCCTTCTTATCAAAGGTGTAC
LOC_Os02g09630
Os.5025.1.S1_at--865--2891Chr02:4949789..4949812 (24 bp)
AAGGTGTACAGGTGCATGTTCCCAA
LOC_Os02g09630
Os.5025.1.S1_at--433--5051Chr02:4949749..4949773 (25 bp)
GCAGAAGCTGGATTTGTATTATTAA
LOC_Os02g09630
Os.5025.1.S1_at--1135--7031Chr02:4949704..4949728 (25 bp)
GTAAAACTCCCAATCGTATACGTAT
LOC_Os02g09630
Os.5025.1.S1_at--539--511Chr02:4949692..4949716 (25 bp)
ATCGTATACGTATTTCCGACAGGAA
LOC_Os02g09630
Os.5025.1.S1_at--485--8791Chr02:4949644..4949668 (25 bp)
TGTTCGTTCTTGTTCTTTATTACAG
LOC_Os02g09630
Os.5025.1.S1_at--1123--8771Chr02:4949634..4949658 (25 bp)
TGTTCTTTATTACAGTCCCCTGGCA
LOC_Os02g09630
Os.5025.1.S1_at--310--7251Chr02:4949620..4949644 (25 bp)
GTCCCCTGGCACAAATCAAATCACA
LOC_Os02g09630
Os.5025.1.S1_at--808--6051Chr02:4949588..4949612 (25 bp)
GAGATTGGCACATGTAACTTACCTG
LOC_Os02g09630
Os.5025.1.S1_at--1082--10451Chr02:4949570..4949594 (25 bp)
TTACCTGCCTATTCTTGTGCGGAAA
LOC_Os02g09630
Target Sequence 
AAAGCCGAGAAGAGGTCCTTCTTATCAAAGGTGTACAGGTGCATGTTCCCAAGGGTGAGGGAGTGATGCAGAAGCTGGAT
TTGTATTATTAATCCGACCTTAATTAATTACTGTAAAACTCCCAATCGTATACGTATTTCCGACAGGAAATGTACTGTGT
AATTAATTAATTTGTTCGTTCTTGTTCTTTATTACAGTCCCCTGGCACAAATCAAATCACAATATGATGAGATTGGCACA
TGTAACTTACCTGCCTATTCTTGTGCGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis