Browse Element(s) Details


OsAffx.2554.1.S1_at

Description tigr:9630.m00882
TID=OsAffx.2554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0966011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09600Os.4883.1.S1_at10/112+4938727..4942072expressed protein
LOC_Os02g09610Os.55688.1.S1_at11/112+4942759..4944252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g09620Os.51107.1.S1_at11/112+4944685..4948383GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os02g09630Os.5025.1.S1_at11/112+4949549..4952480Nitrate-induced NOI protein, expressed
LOC_Os02g09640OsAffx.24175.1.S1_at11/112+4954135..4955518hypothetical protein
LOC_Os02g09650NANA2+4958924..4959614AP2 domain containing protein, expressed
LOC_Os02g09660OsAffx.2554.1.S1_at11/112+4965201..4965467expressed protein
LOC_Os02g09670Os.50301.1.S1_at11/112+4966917..4973612expressed protein
LOC_Os02g09670Os.57116.1.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09670OsAffx.26564.3.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09690Os.51368.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690Os.51722.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_x_at10/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_at10/112+4974451..4984577expressed protein
LOC_Os02g09710OsAffx.24176.1.S1_at10/112+4985040..4985860hypothetical protein
LOC_Os02g09720OsAffx.11961.1.S1_at3/112+4989053..4997675ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2554.1.S1_at--188--5752Chr02:4965267..4965291 (25 bp)
GACGGCGTAGGCGACCTCGGAGACG
LOC_Os02g09660
OsAffx.2554.1.S1_at--237--9452Chr02:4965283..4965307 (25 bp)
TCGGAGACGTTCGTGCACACCTTGT
LOC_Os02g09660
OsAffx.2554.1.S1_at--523--1392Chr02:4965287..4965311 (25 bp)
AGACGTTCGTGCACACCTTGTTGTG
LOC_Os02g09660
OsAffx.2554.1.S1_at--43--7352Chr02:4965295..4965319 (25 bp)
GTGCACACCTTGTTGTGTCGGTCCT
LOC_Os02g09660
OsAffx.2554.1.S1_at--573--8812Chr02:4965305..4965329 (25 bp)
TGTTGTGTCGGTCCTTGCTCCTGGA
LOC_Os02g09660
OsAffx.2554.1.S1_at--535--7792Chr02:4965314..4965338 (25 bp)
GGTCCTTGCTCCTGGACGCGGACCA
LOC_Os02g09660
OsAffx.2554.1.S1_at--826--2171Chr02:4965338..4965362 (25 bp)
ACACGATGCGGCCTTACCCCGAATG
LOC_Os02g09660
OsAffx.2554.1.S1_at--632--10471Chr02:4965351..4965375 (25 bp)
TTACCCCGAATGCAGTGGCCAGTGC
LOC_Os02g09660
OsAffx.2554.1.S1_at--328--9091Chr02:4965399..4965423 (25 bp)
TGCTACCACCACCATGGGCAACTGG
LOC_Os02g09660
OsAffx.2554.1.S1_at--1031--1711Chr02:4965406..4965430 (25 bp)
ACCACCATGGGCAACTGGTTCTTGT
LOC_Os02g09660
OsAffx.2554.1.S1_at--865--792Chr02:4965412..4965436 (25 bp)
ATGGGCAACTGGTTCTTGTCTTCCT
LOC_Os02g09660
Target Sequence 
GACGGCGTAGGCGACCTCGGAGACGTTCGTGCACACCTTGTTGTGTCGGTCCTTGCTCCTGGACGCGGACCACACGATGC
GGCCTTACCCCGAATGCAGTGGCCAGTGCGCCGACGGGCGTCGACTCGCTGCTGCTACCACCACCATGGGCAACTGGTTC
TTGTCTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis