Browse Element(s) Details


OsAffx.26564.3.S1_at

Description tigr:9630.m00883
TID=OsAffx.26564.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0967010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09600Os.4883.1.S1_at10/112+4938727..4942072expressed protein
LOC_Os02g09610Os.55688.1.S1_at11/112+4942759..4944252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g09620Os.51107.1.S1_at11/112+4944685..4948383GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os02g09630Os.5025.1.S1_at11/112+4949549..4952480Nitrate-induced NOI protein, expressed
LOC_Os02g09640OsAffx.24175.1.S1_at11/112+4954135..4955518hypothetical protein
LOC_Os02g09650NANA2+4958924..4959614AP2 domain containing protein, expressed
LOC_Os02g09660OsAffx.2554.1.S1_at11/112+4965201..4965467expressed protein
LOC_Os02g09670Os.50301.1.S1_at11/112+4966917..4973612expressed protein
LOC_Os02g09670Os.57116.1.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09670OsAffx.26564.3.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09690Os.51368.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690Os.51722.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_x_at10/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_at10/112+4974451..4984577expressed protein
LOC_Os02g09710OsAffx.24176.1.S1_at10/112+4985040..4985860hypothetical protein
LOC_Os02g09720OsAffx.11961.1.S1_at3/112+4989053..4997675ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009611biological_processresponse to wounding
GO:0009800biological_processcinnamic acid biosynthesis
GO:0009892biological_processnegative regulation of metabolism
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26564.3.S1_at--1160--9231Chr02:4967138..4967162 (25 bp)
TCCGCAGAAGCATCAGCCAGTTAGT
LOC_Os02g09670
OsAffx.26564.3.S1_at--850--1211Chr02:4967156..4967180 (25 bp)
AGTTAGTGCCCGGACCAGCGTTGCT
LOC_Os02g09670
OsAffx.26564.3.S1_at--274--6671Chr02:4967175..4967199 (25 bp)
GTTGCTGCGGCAAGCGAGCTAACCA
LOC_Os02g09670
OsAffx.26564.3.S1_at--774--3231Chr02:4967185..4967209 (25 bp)
CAAGCGAGCTAACCACGACGGCCAG
LOC_Os02g09670
OsAffx.26564.3.S1_at--956--1851Chr02:4967199..4967223 (25 bp)
ACGACGGCCAGCACTGTCAGCTTTC
LOC_Os02g09670
OsAffx.26564.3.S1_at--475--5091NONE
GCACCGGCGCCGAAACTTGTGCCAA
NONE
OsAffx.26564.3.S1_at--126--4571Chr02:4967938..4967957 (20 bp)
GCGCCGAAACTTGTGCCAACTGCTG
LOC_Os02g09670
OsAffx.26564.3.S1_at--1158--8691Chr02:4967944..4967968 (25 bp)
TGTGCCAACTGCTGAACGGTCCAAT
LOC_Os02g09670
OsAffx.26564.3.S1_at--626--4371Chr02:4967948..4967972 (25 bp)
CCAACTGCTGAACGGTCCAATACTA
LOC_Os02g09670
OsAffx.26564.3.S1_at--521--471Chr02:4968084..4968108 (25 bp)
ATCTCCTAGATCGTGTCGTGCGCCA
LOC_Os02g09670
OsAffx.26564.3.S1_at--312--10051Chr02:4968090..4968114 (25 bp)
TAGATCGTGTCGTGCGCCACTCCTC
LOC_Os02g09670
Target Sequence 
TCCGCAGAAGCATCAGCCAGTTAGTGCCCGGACCAGCGTTGCTGCGGCAAGCGAGCTAACCACGACGGCCAGCACTGTCA
GCTTTCCGCCCCTAGCACCGGCGCCGAAACTTGTGCCAACTGCTGAACGGTCCAATACTAGGTCTCACCGGGAGCGTGAA
GCCCGAAACGGCACGCGGAAGCGCGAAGCGGCGGCCGCCGCCGCCGGTCGAGCGGGACGGCGGCGGCGCTGCGCGGCGCG
CCCAACCCCCCATCTCCTAGATCGTGTCGTGCGCCACTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26564.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis