Browse Element(s) Details


Os.57116.1.S1_at

Description gb:AK110945.1
DB_XREF= gi:32996154
TID=Os.57116.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57116 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-H05, full insert sequence.
FL= gb:AK110945.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0967010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09600Os.4883.1.S1_at10/112+4938727..4942072expressed protein
LOC_Os02g09610Os.55688.1.S1_at11/112+4942759..4944252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g09620Os.51107.1.S1_at11/112+4944685..4948383GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os02g09630Os.5025.1.S1_at11/112+4949549..4952480Nitrate-induced NOI protein, expressed
LOC_Os02g09640OsAffx.24175.1.S1_at11/112+4954135..4955518hypothetical protein
LOC_Os02g09650NANA2+4958924..4959614AP2 domain containing protein, expressed
LOC_Os02g09660OsAffx.2554.1.S1_at11/112+4965201..4965467expressed protein
LOC_Os02g09670Os.50301.1.S1_at11/112+4966917..4973612expressed protein
LOC_Os02g09670Os.57116.1.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09670OsAffx.26564.3.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09690Os.51368.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690Os.51722.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_x_at10/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_at10/112+4974451..4984577expressed protein
LOC_Os02g09710OsAffx.24176.1.S1_at10/112+4985040..4985860hypothetical protein
LOC_Os02g09720OsAffx.11961.1.S1_at3/112+4989053..4997675ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009611biological_processresponse to wounding
GO:0009800biological_processcinnamic acid biosynthesis
GO:0009892biological_processnegative regulation of metabolism
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57116.1.S1_at--559--4211NONE
CCCCACCAGGTGCACAAGAGATGAA
NONE
Os.57116.1.S1_at--291--291Chr02:4971185..4971209 (25 bp)
ATAGAGGCCATTCTCATTAGCAATG
LOC_Os02g09670
Os.57116.1.S1_at--476--3731Chr02:4971239..4971263 (25 bp)
CTCACCGGACTGCATGACAACAATT
LOC_Os02g09670
Os.57116.1.S1_at--614--5192Chr02:4971297..4971321 (25 bp)
GCAATTATGATAGTAGTCCGGCCCA
LOC_Os02g09670
Os.57116.1.S1_at--803--9271Chr02:4971313..4971337 (25 bp)
TCCGGCCCATAGATGCCATGTCTAG
LOC_Os02g09670
Os.57116.1.S1_at--928--751Chr02:4971330..4971354 (25 bp)
ATGTCTAGGGCCTCCTGTACAATGC
LOC_Os02g09670
Os.57116.1.S1_at--412--8751Chr02:4971345..4971369 (25 bp)
TGTACAATGCGCTCTGACTCAGTGT
LOC_Os02g09670
Os.57116.1.S1_at--461--951Chr02:4971393..4971417 (25 bp)
AGGAGTAGGATCTTGGGTGACTTCA
LOC_Os02g09670
Os.57116.1.S1_at--344--7771Chr02:4971408..4971432 (25 bp)
GGTGACTTCAGGATTGCTCTGGCAA
LOC_Os02g09670
Os.57116.1.S1_at--257--4792Chr02:4971423..4971447 (25 bp)
GCTCTGGCAATAGCAATTCTCTGCT
LOC_Os02g09670
Os.57116.1.S1_at--753--9071Chr02:4971444..4971468 (25 bp)
TGCTTCTGCCCTCCAGACATTTGGA
LOC_Os02g09670
Target Sequence 
CCCCACCAGGTGCACAAGAGATGAATAGAGGCCATTCTCATTAGCAATGAGCTCATCATGGGGTCCCAGCTCCATAACCT
CACCGGACTGCATGACAACAATTATGTCAGCATTGCGGATAGTGGATAGACGATGTGCAATTATGATAGTAGTCCGGCCC
ATAGATGCCATGTCTAGGGCCTCCTGTACAATGCGCTCTGACTCAGTGTCCAATGCACTAGTGGCTTCATCAAGGAGTAG
GATCTTGGGTGACTTCAGGATTGCTCTGGCAATAGCAATTCTCTGCTTCTGCCCTCCAGACATTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis