Browse Element(s) Details


OsAffx.11961.1.S1_at

Description tigr:9630.m00886
TID=OsAffx.11961.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=multidrug resistance p-glycoprotein; ABC transporter-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g097203/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09660OsAffx.2554.1.S1_at11/112+4965201..4965467expressed protein
LOC_Os02g09670Os.50301.1.S1_at11/112+4966917..4973612expressed protein
LOC_Os02g09670Os.57116.1.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09670OsAffx.26564.3.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09690Os.51368.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690Os.51722.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_x_at10/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_at10/112+4974451..4984577expressed protein
LOC_Os02g09710OsAffx.24176.1.S1_at10/112+4985040..4985860hypothetical protein
LOC_Os02g09720OsAffx.11961.1.S1_at3/112+4989053..4997675ABC transporter family protein, putative, expressed
LOC_Os02g09730OsAffx.24177.1.S1_at11/112+5014834..5017777hypothetical protein
LOC_Os02g09740Os.6254.1.S1_at11/112+5019762..5028025strubbelig receptor family 8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11961.1.S1_at--966--1531Chr02:4977180..4977204 (25 bp)
AGCATATAATCCTCGAGCGCTGCGG
NONE
OsAffx.11961.1.S1_at--150--3831Chr02:4977161..4977185 (25 bp)
CTGCGGCGGCACATTGGATTGGTCA
NONE
OsAffx.11961.1.S1_at--789--2032Chr02:4989518..4989542 (25 bp)
ACTATTTGCAGGTACAATCAGAGAA
LOC_Os02g09720
OsAffx.11961.1.S1_at--962--8652Chr02:4989488..4989512 (25 bp)
TGTGTATGGCACAGAAACGGCTAGT
LOC_Os02g09720
OsAffx.11961.1.S1_at--977--391Chr02:4976964..4976988 (25 bp)
ATCAGGAGGACAGAAACAGCGCATT
NONE
OsAffx.11961.1.S1_at--784--2851Chr02:4976883..4976907 (25 bp)
AAGTGCACTAGATAGCCAGTCCGAG
NONE
OsAffx.11961.1.S1_at--524--9991Chr02:4976871..4976895 (25 bp)
TAGCCAGTCCGAGAAAGTGGTACAA
NONE
OsAffx.11961.1.S1_at--715--7491Chr02:4976807..4976831 (25 bp)
GTGGTGGCACACAGGCTGAGCACTA
NONE
OsAffx.11961.1.S1_at--1024--3471Chr02:4976796..4976820 (25 bp)
CAGGCTGAGCACTATACAAAATTGT
NONE
OsAffx.11961.1.S1_at--844--32Chr02:4976776..4976800 (25 bp)
ATTGTGACCTTATCACTGTGCTCGA
NONE
OsAffx.11961.1.S1_at--1056--2931Chr02:4976704..4976728 (25 bp)
AAGGCCCCTCTGGAACATATTTTAG
NONE
Target Sequence 
AGCATATAATCCTCGAGCGCTGCGGCGGCACATTGGATTGGTCAGCCAAGAGCCAACACTATTTGCAGGTACAATCAGAG
AAAACATTGTGTATGGCACAGAAACGGCTAGTGAGGCGGAAATTGAGGATGCAGCAAGATCTGCTAATGCACATGACTTT
ATTAGCAACCTGAAGGATGGATATGGTACGTGGTGTGGTGAGAGAGGAGTTCAGCTATCAGGAGGACAGAAACAGCGCAT
TGCAATTGCCCGTGCCATACTGAAGAACCCAGCTATCCTGCTTCTGGATGAGGCTACAAGTGCACTAGATAGCCAGTCCG
AGAAAGTGGTACAAGAGGCACTAGATCGAGTGATGATTGACAGAACAAGTGTGGTGGTGGCACACAGGCTGAGCACTATA
CAAAATTGTGACCTTATCACTGTGCTCGAAAAAGGGATAGTTGTGGAGAAGGGCACACACGCATCCCTCATGGCCAAAGG
CCCCTCTGGAACATATTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis